vibez.informatik.uni-freiburg.de

ViBE-Z: The Virtual Brain Explorer for Zebrafish

ViBE-Z: The Virtual Brain Explorer for Zebrafish. ViBE-Z, the "Virtual Brain Explorer for Zebrafish" is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. 2 ViBE-Z Database and Atlas. 21 Explore Database with ImageJ. 22 Explore Database with Matlab. 31 Usage of the Web Interface. ViBE-Z contains a database. A brief overview over the main parts is depicted in the following figure. Uint8 500x500x8...

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ViBE-Z: The Virtual Brain Explorer for Zebrafish | vibez.informatik.uni-freiburg.de Reviews

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ViBE-Z: The Virtual Brain Explorer for Zebrafish. ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. 2 ViBE-Z Database and Atlas. 21 Explore Database with ImageJ. 22 Explore Database with Matlab. 31 Usage of the Web Interface. ViBE-Z contains a database. A brief overview over the main parts is depicted in the following figure. Uint8 500x500x8...

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ViBE-Z: The Virtual Brain Explorer for Zebrafish | vibez.informatik.uni-freiburg.de Reviews

https://vibez.informatik.uni-freiburg.de

ViBE-Z: The Virtual Brain Explorer for Zebrafish. ViBE-Z, the "Virtual Brain Explorer for Zebrafish" is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. 2 ViBE-Z Database and Atlas. 21 Explore Database with ImageJ. 22 Explore Database with Matlab. 31 Usage of the Web Interface. ViBE-Z contains a database. A brief overview over the main parts is depicted in the following figure. Uint8 500x500x8...

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vibez.informatik.uni-freiburg.de

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ViBE-Z Data Preparation using ImageJ

http://vibez.informatik.uni-freiburg.de/data_preparation.html

ViBE-Z Data Preparation using ImageJ. Steps to reformat data from confocal stacks to the start of ViBE-Z. TESTED ON A WINDOWS 7 MACHINE - other Windows versions and Linux should work as well. Record stacks exactly as instructed by Rath et al. Nat. Protocols 2012 ( doi:10.1038/protex.2012.031. Lsm file with 8 stacks dorsal recording. Lsm file with 8 stacks ventral recording. Ready (or similar other confocal multi-stack file). Have ImageJ/Fiji ready with PLUGINS. Our HDF5 plugin (see HDF5 plugin webpage.

2

ViBE-Z Validate Plugin

http://vibez.informatik.uni-freiburg.de/vibez_validate.html

The Vibez-validate plugin for ImageJ allows you to do some initial quality checks on your data, before uploading it to the ViBE-Z Server. Start "Vibez Validate" from the "Plugins" menu in ImageJ using Plugins - HDF5 - Vibez validate. And select a HDF5-file that you have prepared according to the ViBE-Z Data Preparation using ImageJ. The plugin loads all 16 stacks writes some log information and creates 4 collages:. Maximum intensity projections (MIP) in z-direction. The central slices in z-direction.

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imaging.uni-freiburg.de

Life Imaging Center (LIC)

http://www.imaging.uni-freiburg.de/facilityLICInfrastructure.php

LIC Cooperations and Memberships. LIC Infrastucture and Services:. Most modern microscopic techniques (FRET, FRAP, FLIP, FLAP, photo-conversion, photo-activation, uncaging, spectral unmixing, multi-position and large area recording, TIRF, structured illumination, microinjection while imaging) can be performed in combination with live cells or organisms on the available microscope set-ups. The following features are currently implemented:. 1) Automated large area focus position correction. For multimodal ...

zf-health.org

ZF-HEALTH

http://www.zf-health.org/information/news.html

ZF-HEALTH Symposium 2015, June 4, Gif-sur-Yvette, France. May 20, 2015. We are pleased to invite you to attend the ZF-HEALTH Symposium 2015 The Zebrafish: A Vertebrate Model Organism for Biological and Biomedical Investigations that follows the training course ZF-Health Resources for in Silico Experimentation . The one day conference will take place in Gif-sur-Yvette, France, June 4, 2015. Francesco Argenton (Univ. Padova). Michael Richardson (Univ. Leiden). Olaf Ronneberger (Univ. Freiburg). May 13, 2015.

lmb.informatik.uni-freiburg.de

Homepage of Olaf Ronneberger

http://lmb.informatik.uni-freiburg.de/people/ronneber/index.en.html

Pattern Recognition and Image Processing. Dept of Computer Science. Homepage of Olaf Ronneberger. Apl Prof. Dr. Olaf Ronneberger. Tel: 44 20 3321 1736. Institut für Informatik. Lehrstuhl für Mustererkennung und Bildverarbeitung. Biomedical image analysis for volumetric images (3D) and volumetric movies (4D). Rotation-invariant detection and recognition. Image registration, segmentation, tracking, and model learning. Block seminar: Bio-Medical Image Analysis. Lecture: 3D Image Analysis. Standardized evalu...

lmb.informatik.uni-freiburg.de

Homepage of Olaf Ronneberger

http://lmb.informatik.uni-freiburg.de/people/ronneber/index.html

Pattern Recognition and Image Processing. Dept of Computer Science. Homepage of Olaf Ronneberger. Apl Prof. Dr. Olaf Ronneberger. Tel: 44 20 3321 1736. Institut für Informatik. Lehrstuhl für Mustererkennung und Bildverarbeitung. Biomedical image analysis for volumetric images (3D) and volumetric movies (4D). Rotation-invariant detection and recognition. Image registration, segmentation, tracking, and model learning. Block seminar: Bio-Medical Image Analysis. Lecture: 3D Image Analysis. Standardized evalu...

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ViBE-Z: The Virtual Brain Explorer for Zebrafish

ViBE-Z: The Virtual Brain Explorer for Zebrafish. ViBE-Z, the "Virtual Brain Explorer for Zebrafish" is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. 2 ViBE-Z Database and Atlas. 21 Explore Database with ImageJ. 22 Explore Database with Matlab. 31 Usage of the Web Interface. ViBE-Z contains a database. A brief overview over the main parts is depicted in the following figure. Uint8 500x500x8...

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