vinaykmittal.blogspot.com
Bioinformatics blogBlog about next-generation sequencing data analysis related bioinformatics issues and problems.
http://vinaykmittal.blogspot.com/
Blog about next-generation sequencing data analysis related bioinformatics issues and problems.
http://vinaykmittal.blogspot.com/
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Bioinformatics blog | vinaykmittal.blogspot.com Reviews
https://vinaykmittal.blogspot.com
Blog about next-generation sequencing data analysis related bioinformatics issues and problems.
vinaykmittal.blogspot.com
Bioinformatics blog: How to filter out background noise from the transcriptome assembly? -- Part 1
http://www.vinaykmittal.blogspot.com/2014/01/how-to-filter-out-background-noise-from.html
On this blog, I share my thoughts on the next-generation sequencing data analysis related issues and problems that I (or you may) have come across at some point of time.I hope you find it useful. Sunday, January 26, 2014. How to filter out background noise from the transcriptome assembly? Apologies for not being active on the blog for a while. I have been planning to write on this topic for a long time so here it is:. Insert size based filtering. And Cabili et al. Next post in this series. Comment modera...
Bioinformatics blog: How to filter out background noise from the transcriptome assembly? -- Part 4
http://www.vinaykmittal.blogspot.com/2014/08/how-to-filter-out-background-noise-from.html
On this blog, I share my thoughts on the next-generation sequencing data analysis related issues and problems that I (or you may) have come across at some point of time.I hope you find it useful. Monday, August 4, 2014. How to filter out background noise from the transcriptome assembly? Previous post in this series. In this post, I'll discuss yet another method to filter out background noise from the RNA-Seq based transcriptome assemblies. This method was originally proposed by Cabili. A full-length tran...
Bioinformatics blog: How to filter out background noise from the transcriptome assembly? -- Part 2
http://www.vinaykmittal.blogspot.com/2014/04/how-to-filter-out-background-noise-from.html
On this blog, I share my thoughts on the next-generation sequencing data analysis related issues and problems that I (or you may) have come across at some point of time.I hope you find it useful. Sunday, April 27, 2014. How to filter out background noise from the transcriptome assembly? Previous post in this series. Next post in this series. This post is in continuation of my previous blog post. 2) Single exon transcripts mapping completely outside the known gene boundaries. These short fragments are...
Bioinformatics blog: FPKM/RPKM normalization caveat and upper quartile normalization
http://www.vinaykmittal.blogspot.com/2013/10/fpkmrpkm-normalization-caveat-and-upper.html
On this blog, I share my thoughts on the next-generation sequencing data analysis related issues and problems that I (or you may) have come across at some point of time.I hope you find it useful. Wednesday, October 2, 2013. FPKM/RPKM normalization caveat and upper quartile normalization. So normalization by total number of reads can sometimes lead to false detection of differentially expressed genes or transcripts in quantitative comparison studies based on RNA-Seq. 1) Create a matrix (in an excel sheet ...
Bioinformatics blog: Difference between Cuffcompare and Cuffmerge
http://www.vinaykmittal.blogspot.com/2013/11/difference-between-cuffcompare-and.html
On this blog, I share my thoughts on the next-generation sequencing data analysis related issues and problems that I (or you may) have come across at some point of time.I hope you find it useful. Tuesday, November 12, 2013. Difference between Cuffcompare and Cuffmerge. Although Cuffcompare and Cuffmerge may seem to perform same task when it comes to handling multiple transcriptome assemblie, there are sitll substantial differences among the two.Cufflinks manual. Resulting file, "combined.gtf", contai...
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mcdonaldlab.biology.gatech.edu
McDonald Lab :: Home
http://www.mcdonaldlab.biology.gatech.edu/vinay_mittal.htm
Vinay K. Mittal. 315 Ferst Drive NW. Atlanta, GA-30332, U.S.A. School of Biology, Georgia Institute of Technology, Atlanta, GA. Aug 2007 - Present ). School of Biology, Georgia Institute of Technology, Atlanta, GA. Aug 2010 - Dec 2010 ). G-Biosciences, New Delhi, India. School of Biology, Georgia Institute of Technology, Atlanta, GA. School of Biology, Georgia Institute of Technology, Atlanta, GA. Jaypee University of Information Technology, Solan, India. Next-generation sequencing data analysis.
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Bioinformatics blog
On this blog, I share my thoughts on the next-generation sequencing data analysis related issues and problems that I (or you may) have come across at some point of time.I hope you find it useful. Wednesday, July 22, 2015. RNA-Seq expression metrics: FPKM, RPKM and TMP explained by StatQuest. For text summary please refer to: StatQuest page. Links to this post. New ovarian cancer study on large structural variants based on TCGA data is out. Here is the brief summary:. First we designed an integrated bioin...
Something to think about
Something to think about. Saturday, December 27, 2008. I got 5 million . I got 5 million dollars … What to do next? Let me start with a little background about the money I am talking about. A big question……. Now time to spend my money …. What to do with it? Later, a new idea came in. Let me buy some property which gives a good return while I can sit and enjoy its returns throughout my life time and fulfil my dreams of visiting as many countries as possible. But…. Hold on …. Ev...What will happen with my ...
Infinite Improbability
Random thoughts that run through my head, stories about my life and ideas about software programming. Page 1 of 1. Proudly published with Ghost.
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Learn SQL BI
Tuesday, July 8, 2014. Finding out the Configuration File information for SSIS packages with in the SQL Server Agent Jobs. Select SJ.name as Job Name,. SJSstep name as Step Name,. SJSstep id as Step Num,. SJScommand as Script Command,. SUBSTRING(Command, PATINDEX('%/CONFIGFILE%', command) 13, PATINDEX('%/CHECKPOINTING%', command) - (PATINDEX('%/CONFIGFILE%', command) 15) as Config File. Inner Join sysjobs SJ. On SJS.job id = SJ.job id. Where subsystem = 'SSIS' and Command like '%/CONFIGFILE%'.
In This Beautiful World...
In This Beautiful World. Tuesday, February 04, 2014. When Sachin Tendulkar retired. I was away from Internet when he retired in November but today as he received the ultimate honour,. It’s sinking in. We, the kids from 80s, grew up with Sachin. That signature straight drive. Was one of the highlights of growing up days. Etched forever in memory. Our hearts have a special compartment for him, for when be batted,. We felt like God. So when Sachin Tendulkar retired, may be it’s not just him…. But not our ve...
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