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Ins & Outs

Random readings and writings of a chemist with interests in mathematics and other stuff. Clsplit: Combination of `split’ and `csplit’. August 15th, 2011 by Xianlong Wang. Recently, I need to process large numbers of SDF files and some of them are too big ( 500MB) to load into memory altogether. A immediate solution is to split these big files into smaller chunks. The two commands,. Which come with Linux, seem incapable to meet this need. That is not what I want. (One could use. For example, if i want to ...

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Ins & Outs | wang.blogs.brynmawr.edu Reviews
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Random readings and writings of a chemist with interests in mathematics and other stuff. Clsplit: Combination of `split’ and `csplit’. August 15th, 2011 by Xianlong Wang. Recently, I need to process large numbers of SDF files and some of them are too big ( 500MB) to load into memory altogether. A immediate solution is to split these big files into smaller chunks. The two commands,. Which come with Linux, seem incapable to meet this need. That is not what I want. (One could use. For example, if i want to ...
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Ins & Outs | wang.blogs.brynmawr.edu Reviews

https://wang.blogs.brynmawr.edu

Random readings and writings of a chemist with interests in mathematics and other stuff. Clsplit: Combination of `split’ and `csplit’. August 15th, 2011 by Xianlong Wang. Recently, I need to process large numbers of SDF files and some of them are too big ( 500MB) to load into memory altogether. A immediate solution is to split these big files into smaller chunks. The two commands,. Which come with Linux, seem incapable to meet this need. That is not what I want. (One could use. For example, if i want to ...

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1

kernel « Ins & Outs

http://wang.blogs.brynmawr.edu/tag/kernel

Random readings and writings of a chemist with interests in mathematics and other stuff. Posts Tagged ‘kernel’. Gentoo Cluster: ofa kernel installation. Friday, July 29th, 2011. Previously, I have setup the cluster and installed the Infiniband kernel modules and userspace libraries. However, a problem was lingering. When the command. Was run, the following error message was always given. Mlx4: There is a mismatch between the kernel and the userspace libraries: Kernel does not support XRC. Exiting. After ...

2

mvapich2 « Ins & Outs

http://wang.blogs.brynmawr.edu/tag/mvapich2

Random readings and writings of a chemist with interests in mathematics and other stuff. Posts Tagged ‘mvapich2’. Gentoo Cluster: Gamess Installation with MVAPICH2 and PBS. Monday, August 1st, 2011. 1 gamess-20101001.3 (Dowload it beforehand from its developer’s website). 2 mvapich2-1.7rc1. (Previous versions should be okay and I installed it under /usr/local/). 4 torque-2.4.14 (OpenPBS). User flag for gamess in. 5 Create a new script. Sbin/sysctl -w kernel.shmmax=XXXX. To update the setting in-the-fly.

3

umount: device is busy « Ins & Outs

http://wang.blogs.brynmawr.edu/2011/07/27/umount-device-is-busy

Random readings and writings of a chemist with interests in mathematics and other stuff. Laquo; Gentoo: NFS/RDMA (Infiniband). Gentoo Cluster: a Strange OpenMPI Problem ». Umount: device is busy. Sometimes, when i try to umount a mounted device, the following error occurs. Xwang@node1 $ umount /mnt/ps4000e/home. Umount.nfs: /mnt/ps4000e/home: device is busy. Umount.nfs: /mnt/ps4000e/home: device is busy. The solution is to use. Xwang # fuser -m /mnt/ps4000e/home/. To find out the process. Xwang # ps 7706.

4

clsplit « Ins & Outs

http://wang.blogs.brynmawr.edu/tag/clsplit

Random readings and writings of a chemist with interests in mathematics and other stuff. Posts Tagged ‘clsplit’. Clsplit: Combination of `split’ and `csplit’. Monday, August 15th, 2011. Recently, I need to process large numbers of SDF files and some of them are too big ( 500MB) to load into memory altogether. A immediate solution is to split these big files into smaller chunks. The two commands,. Which come with Linux, seem incapable to meet this need. That is not what I want. (One could use. For example...

5

linux « Ins & Outs

http://wang.blogs.brynmawr.edu/tag/linux

Random readings and writings of a chemist with interests in mathematics and other stuff. Posts Tagged ‘linux’. Clsplit: Combination of `split’ and `csplit’. Monday, August 15th, 2011. Recently, I need to process large numbers of SDF files and some of them are too big ( 500MB) to load into memory altogether. A immediate solution is to split these big files into smaller chunks. The two commands,. Which come with Linux, seem incapable to meet this need. That is not what I want. (One could use. For example, ...

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Ins & Outs

Random readings and writings of a chemist with interests in mathematics and other stuff. Clsplit: Combination of `split’ and `csplit’. August 15th, 2011 by Xianlong Wang. Recently, I need to process large numbers of SDF files and some of them are too big ( 500MB) to load into memory altogether. A immediate solution is to split these big files into smaller chunks. The two commands,. Which come with Linux, seem incapable to meet this need. That is not what I want. (One could use. For example, if i want to ...

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