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15 - 08 - 2015. PrionScan: online tool and database of prion domains predicted for all publicly available proteomes. Based on amino acid propensities previously observed in prion domains experimentally tested in yeast, we have built a probabilistic model, benchmarked to handle large sequence databases, and used it to predict prion-like sequence stretches in all the proteomes available annotated in UniprotKB. ProtSA: calculation of sequence specific protein solvent accessibilities in the unfolded ensemble.

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15 - 08 - 2015. PrionScan: online tool and database of prion domains predicted for all publicly available proteomes. Based on amino acid propensities previously observed in prion domains experimentally tested in yeast, we have built a probabilistic model, benchmarked to handle large sequence databases, and used it to predict prion-like sequence stretches in all the proteomes available annotated in UniprotKB. ProtSA: calculation of sequence specific protein solvent accessibilities in the unfolded ensemble.

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15 - 08 - 2015. PrionScan: online tool and database of prion domains predicted for all publicly available proteomes. Based on amino acid propensities previously observed in prion domains experimentally tested in yeast, we have built a probabilistic model, benchmarked to handle large sequence databases, and used it to predict prion-like sequence stretches in all the proteomes available annotated in UniprotKB. ProtSA: calculation of sequence specific protein solvent accessibilities in the unfolded ensemble.

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webapps.bifi.es

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PrionScan

http://webapps.bifi.es/prionscan

05 - 09 - 2016. PrionScan, an online database of predicted prion domains in complete proteomes. PrionScan is a database of prion domains predicted for all publicly available proteomes. Based on amino acid propensities previously observed in prion domains experimentally tested in yeast by Alberti. We have built a probabilistic model, benchmarked to handle large sequence databases, and used it to predict prion-like sequence stretches in all the proteomes available annotated in UniprotKB ( Angarica. If you ...

2

Tnovo Experimental Webserver Application

http://webapps.bifi.es/tnovoms

T-novoMS is a combined de-novo/database-search tool for MSMS tandem spectra identification. Providing one or a list of MSMS spectra (in "dta" format), you will receive an email message with the most-likely, de-novo predicted parent peptide, the best matching peptide found in uniprot, and a measure of the reliability of the de-novo and database-search predictions. Specify a name to identify your job:. NB: input spectra should have charges q =3, otherwise they will be ignored).

3

ProtSA

http://webapps.bifi.es/protsa

05 - 09 - 2016. ProtSA: calculation of sequence specific protein solvent accessibilities in the unfolded ensemble. The results will be e-mailed to the address you provide. You can find a more detailed explanation of this service. In a separate page. The description of the method used for the calculation appears in the main reference ( Bernadó et al. (2006). Though this server has some modifications, which are explained in the information page. And Bernadó et al. (2006). If you use ProtSA. To do those cal...

4

ProteinLIPS

http://webapps.bifi.es/lips

05 - 09 - 2016. Examples: 1BWM, HYDROLASE, LYSOZYME, HOMO SAPIENS, CHICKEN. Examples: HYDROLASE, LYSOZYME, HOMO SAPIENS, CHICKEN. Examples: HYDROLASE, LYSOZYME, HOMO SAPIENS, CHICKEN. If you find our server useful to your research please consider also citing the following article:. VE Angarica, J Sancho (2012). Protein dynamics governed by interfaces of high polarity and low packing density. PloS One 7 (10),. E48212 . [ PUBMED. Searching, please wait . Powered By ChronoForms - ChronoEngine.com.

5

Tnovo Experimental Webserver Application

http://webapps.bifi.es/14-apps/tnovoms/56-tnovoms

T-novoMS is a combined de-novo/database-search tool for MSMS tandem spectra identification. Providing one or a list of MSMS spectra (in "dta" format), you will receive an email message with the most-likely, de-novo predicted parent peptide, the best matching peptide found in uniprot, and a measure of the reliability of the de-novo and database-search predictions. Specify a name to identify your job:. NB: input spectra should have charges q =3, otherwise they will be ignored).

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15 - 08 - 2015. PrionScan: online tool and database of prion domains predicted for all publicly available proteomes. Based on amino acid propensities previously observed in prion domains experimentally tested in yeast, we have built a probabilistic model, benchmarked to handle large sequence databases, and used it to predict prion-like sequence stretches in all the proteomes available annotated in UniprotKB. ProtSA: calculation of sequence specific protein solvent accessibilities in the unfolded ensemble.

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