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workflow4metabolomics.org

Workflow4Metabolomics 2.0 | workflow4metabolomics.org

Skip to main content. Welcome to the collaborative portal dedicated to metabolomics data processing, analysis and annotation. The Galaxy environment provides user-friendly interface (e.g. a wokflow editor) as well as convenient functionalities to store and share workflows (modules and their parameters) and histories (input and output data from each analysis). Modules and associated documentation will enable users to build their own workflow, run analyzes, visualize and download the results. Experimenters...

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Workflow4Metabolomics 2.0 | workflow4metabolomics.org | workflow4metabolomics.org Reviews
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Skip to main content. Welcome to the collaborative portal dedicated to metabolomics data processing, analysis and annotation. The Galaxy environment provides user-friendly interface (e.g. a wokflow editor) as well as convenient functionalities to store and share workflows (modules and their parameters) and histories (input and output data from each analysis). Modules and associated documentation will enable users to build their own workflow, run analyzes, visualize and download the results. Experimenters...
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1 workflow4metabolomics org
2 main menu
3 events
4 history
5 introduction
6 the galaxy environment
7 the lc ms workflow
8 the gc ms workflow
9 the nmr workflow
10 references
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Workflow4Metabolomics 2.0 | workflow4metabolomics.org | workflow4metabolomics.org Reviews

https://workflow4metabolomics.org

Skip to main content. Welcome to the collaborative portal dedicated to metabolomics data processing, analysis and annotation. The Galaxy environment provides user-friendly interface (e.g. a wokflow editor) as well as convenient functionalities to store and share workflows (modules and their parameters) and histories (input and output data from each analysis). Modules and associated documentation will enable users to build their own workflow, run analyzes, visualize and download the results. Experimenters...

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workflow4metabolomics.org workflow4metabolomics.org
1

References | workflow4metabolomics.org

http://workflow4metabolomics.org/references

Skip to main content. 1] Goecks J., Nekrutenko A., Taylor J. and Team T.G. (2010). Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology, 11:R86. 2] Blankenberg D., Von Kuster G., Coraor N., Ananda G., Lazarus R., Mangan M., Nekrutenko A. and Taylor J. (2010). Galaxy: a web-based genome analysis tool for experimentalists. Current Protocols in Molecular Biology, 89:19. 7] Kuhl C., Tautenhahn R., Boettch...8] va...

2

Publications | workflow4metabolomics.org

http://workflow4metabolomics.org/publications

Skip to main content. Franck Giacomoni, Gildas Le Corguillé, Misharl Monsoor, Marion Landi, Pierre Pericard, Mélanie Pétéra, Christophe Duperier, Marie Tremblay-Franco, Jean-François Martin, Daniel Jacob, Sophie Goulitquer, Etienne A. Thévenot and Christophe Caron (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics doi:10.1093/bioinformatics/btu813. Gildas Le Corguillé, Pierre Pericard, Urszula Czerwinska, Marion Landi, Franck Giacomoni, C...

3

The LC-MS workflow | workflow4metabolomics.org

http://workflow4metabolomics.org/the-lc-ms-workflow

Skip to main content. Raw data pre-processing with XCMS. The available modules of the LC-MS workflow can be grouped into three categories: pre-processing, statistics, and annotation ( Figure 2. The modules for statistical analysis can also be used with processed data (sample x variable tables) coming from NMR or other "omic" technologies. Figure 2: Available modules for LC-MS analysis. Modules can be selected and chained by the user via the workflow editor ( Figure 3. 10 quality control (pooled) samples,.

4

Datasets and histories | workflow4metabolomics.org

http://workflow4metabolomics.org/datasets-and-histories

Skip to main content. LCMS dataset - Sacurine. NMR Mus musculus dataset. We provide real data sets for tools testing and for tutorials. Cabaton, N.J. et al. Effects of Low Doses of Bisphenol A on the Metabolome of Perinatally Exposed CD-1 Mice. Environmental Health Perspectives, doi:10.1289/ehp.1205588. Dedicate page: NMR Mus musculus dataset. Size: from 188 Mo to 18 Go. Dedicate page: LCMS dataset - Sacurine. File Name: GCMS Idealg FWS SWS.zip. For any requests, please fill in the contact.

5

Events | workflow4metabolomics.org

http://workflow4metabolomics.org/events

Skip to main content. 28th November - 2nd December, 2016. Workflow4Experimenters (W4E) course 2016. Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data. Atelier "Analyses multivariées des données métabolomiques" dans le cadre du workshop "Pharmaco-métabolomique et recherche de nouveaux biomarqueurs en onco-pharmacologie". Ecole-chercheurs : Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics. RFMF / Lyon,France.

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france.list.galaxyproject.org france.list.galaxyproject.org

Archives Galaxy France Liste - [Galaxy-france] Fwd: [bioinfo] Formation : Traitement des donnéesmétabolomiques sous Galaxy

http://france.list.galaxyproject.org/Galaxy-france-Fwd-bioinfo-Formation-Traitement-des-donneesmetabolomiques-sous-Galaxy-tp171.html

Archives Galaxy France Liste. Only in this topic. Galaxy-france] Fwd: [bioinfo] Formation : Traitement des donnéesmétabolomiques sous Galaxy. Ouvrir ce message en vue arborescente. Signaler un Contenu Inapproprié. Galaxy-france] Fwd: [bioinfo] Formation : Traitement des donnéesmétabolomiques sous Galaxy. Forwarding from SFBI,. Forwarded message - - - - -. Date: 2016-06-09 0:49 GMT-07:00. Subject: [bioinfo] Formation : Traitement des donnéesmétabolomiques sous Galaxy. Personnels académiques : 750 ;. Pour ...

metabonews.ca metabonews.ca

MetaboNews -- June 2015

http://www.metabonews.ca/Jun2015/MetaboNews_Jun2015.htm

Published in partnership between. TMIC and the Metabolomics Society. Issue 46 - June 2015. Online version of this newsletter:. Http:/ www.metabonews.ca/Jun2015/MetaboNews Jun2015.htm. Welcome to the forty-sixth issue of MetaboNews. A monthly newsletter published in partnership between The Metabolomics Innovation Centre (TMIC,. Http:/ www.metabolomicscentre.ca/. And the international Metabolomics Society (. Http:/ www.metabolomicssociety.org/. This issue of MetaboNews is supported by:. Our subscriber list...

abims.sb-roscoff.fr abims.sb-roscoff.fr

Galaxy | Analysis Bioinformatics for Marine Science

http://abims.sb-roscoff.fr/resources/galaxy

Skip to main content. Analysis Bioinformatics for Marine Science. ABiMS platform provide currently two Galaxy instances with your ABiMS account. Http:/ galaxy.sb-roscoff.fr. The generalist Galaxy instance with different thematics. NGS : DNASeq, RNASeq, RADSeq, ChipSeq, SNP/Variant calling. Phylogeny : Alignment, Maximum-Likelihood, Distance, Parsimony, Bayesian methods, . Population genetics : RADSeq, . Dedicate Galaxy intance wich provide presently a full LC-MS workflow. Uni- and multivariate analysis.

metabohub.fr metabohub.fr

Workflow4Experimenters (W4E): Using Galaxy and the Workflow4metabolomics infrastructure to analyse your metabolomics data sets | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/workflow4experimenters-w4e-using-galaxy-and-the-workflow4metabolomics-infrastructure-to-analyse-your-metabolomics-data-se.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0. 750 € (...

metabohub.fr metabohub.fr

Pr�sentation | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/presentation-metabohub.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0. Profilage m&...

metabohub.fr metabohub.fr

Services | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/services.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0. Vous trouver...

metabohub.fr metabohub.fr

D�finitions | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/la-metabolomique-et-la-fluxomique--c-est-quoi--.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0.

metabohub.fr metabohub.fr

eMetaboHUB | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/emetabohub.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0. Le logiciel ...

metabohub.fr metabohub.fr

Formation: Traitement des donn�es m�tabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0 | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/formation-traitement-des-donnees-metabolomiques-analyse-et-annotation-avec-galaxy-workflow4metabolomics-2-0.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0. During this ...

metabohub.fr metabohub.fr

Types d��chantillons travaill�s | MetaboHUB | Infrastructure en métabolomique & fluxomique

http://www.metabohub.fr/types-d-echantillons-travailles.html

En mtabolomique et fluxomique. Les sites et implantations. L'Ecole-Chercheur sur les lipides 'The Toulouse school of lipids". 4imes journes scientifiques de MetaboHUB - 28 et 29 avril 2016 Lacanau Ocan Vitalparc. 33mes Journes Franaises de Spectromtrie de Masse du 27 au 30 Septembre 2016 Bordeaux, France. Nouvelle publication: Fortune telling: metabolic markers of plant performance. Formation: Traitement des donnes mtabolomiques, analyse et annotation avec Galaxy - Workflow4Metabolomics 2.0. Un des d&eac...

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Workflow4Metabolomics 2.0 | workflow4metabolomics.org

Skip to main content. Welcome to the collaborative portal dedicated to metabolomics data processing, analysis and annotation. The Galaxy environment provides user-friendly interface (e.g. a wokflow editor) as well as convenient functionalities to store and share workflows (modules and their parameters) and histories (input and output data from each analysis). Modules and associated documentation will enable users to build their own workflow, run analyzes, visualize and download the results. Experimenters...

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