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Xenopus laevis Genome Project

Xenopus laevis Genome Project

http://xenopus.lab.nig.ac.jp/

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Xenopus laevis Genome Project | xenopus.lab.nig.ac.jp Reviews
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Xenopus laevis Genome Project
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gbrowse,blast / blat,keyword search,assembly information,assembly statistics,assembler,gap closing,total,of scaffolds,scaffold n50,longest,rate of 'n,soapdenovo,data set,lib type,ins size,of reads,of bases,paired end,mate pair
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Xenopus laevis Genome Project | xenopus.lab.nig.ac.jp Reviews

https://xenopus.lab.nig.ac.jp

Xenopus laevis Genome Project

INTERNAL PAGES

xenopus.lab.nig.ac.jp xenopus.lab.nig.ac.jp
1

Xenopus laevis Genome Project

http://xenopus.lab.nig.ac.jp/index.php

Xenopus laevis Genome Project. Summary of XENLA7.1 Assembly. The final version of shotgun assembly that we used for chromosome scaffolding). Total number of scaffolds. Total number of contigs. Total length of scaffolds (Mb). Total length of contigs (Mb). Percentage of gaps (%). 37,644/19.3 kb. Number of scaffolds longer than 50 kb. Main genome in scaffolds longer than 50 kb. African clawed frog (right) and Western clawed frog (left). African clawed frog chromosomes.

2

Xenopus laevis Blast

http://xenopus.lab.nig.ac.jp/blast.php

Xenopus laevis Genome Project. Query sequence in FASTA format. Maximum length is 100kb. Xlaevis meraculous v7.1. Xlaevis meraculous v8.0. Xlaevis meraculous v9.1. Blastn (DNA v.s. DNA). Tblastx (DNA v.s. DNA). Tblastn (Protein v.s. DNA). Taxonomy icon Database Center for Life Science licensed under CC Attribution2.1 Japan.

3

X.laevis meraculous v7.1: 1 Mbp from Scaffold102974:2,000,000..3,000,000

http://xenopus.lab.nig.ac.jp/cgi-bin/gb2/gbrowse/xl_v2soap

Dump selection as FASTA. Submit selection to UCSC BLAT. Submit selection to NCBI BLAST. Xenopus laevis Genome Project. Help with this browser. Show my user ID. Xlaevis meraculous v7.1: 1 Mbp from Scaffold102974:2,000,000.3,000,000. Download Decorated FASTA File. Xlaevis meraculous v7.1. Xlaevis meraculous v8.0. Xlaevis meraculous v9.1. BAC and Fosmid end. BAC and Fosmid end. JGI gene (v1.4). JGI gene (v1.4). Show Active Tracks Only. BAC and Fosmid end. BAC and Fosmid full sequence. JGI gene (v1.4).

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xenbase.org xenbase.org

Xenopus Suppliers - Xenbase | A Xenopus laevis and Xenopus tropicalis resource

http://www.xenbase.org/other/obtain.do

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Search Morpholino

http://www.xenbase.org/reagents/morpholino.do

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Xenopus laevis stage series: complete - Xenbase | A Xenopus laevis and Xenopus tropicalis resource

http://www.xenbase.org/anatomy/alldev.do

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Xenbase | A Xenopus laevis and Xenopus tropicalis resource

http://www.xenbase.org/gene/static/geneNomenclature.jsp

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Search Books

http://www.xenbase.org/literature/books.do

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Gene Nomenclature Questions

http://www.xenbase.org/gene/static/geneNomenclatureQuestions.jsp

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Search Literature

http://www.xenbase.org/literature/articles.do

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

xenbase.org xenbase.org

Xenbase Home

http://www.xenbase.org/common

Xenbase is experiencing difficulties due to technical problems with the University of Calgary IT infrastructure and may go temporarily offline. Click on this message to dismiss it. Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 8.0 (J-Strain). X laevis 7.1 (J-Strain). X laevis 6.0 (J-Strain). Ndash;laev...

xenbase.org xenbase.org

miRNA Catalog

http://www.xenbase.org/geneExpression/static/miRNA/body/mirTable.jsp

Click here to close. We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome. My Xenbase: [ Log-in. X laevis 9.1 (J-Strain). X laevis 7.1 (J-Strain). X laevis Mitochondrial (J-Strain). X laevis 1.0 (outbred). X tropicalis 9.0 (Nigerian). X tropicalis 7.1 (Nigerian). X laevis 9.1 (J-Strain) on GBrowse. X laevis 7.1 (J-Strain) on GBrowse. X laevis 1.0 (outbred) on GBrowse. RNAseq Data @ SRA.

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xenopus.lab.nig.ac.jp xenopus.lab.nig.ac.jp

Xenopus laevis Genome Project

Xenopus laevis Genome Project. Xenopus laevis Genome Project. The Xenopus laevis (African clawed frog) J strain draft genome assembly was produced by the National Institute of Genetics (NIG). Assembly version (XenVis 2.0) was constructed from Illumina reads using the SOAPdenovo (version 1.05). The statistics are calculated using scaffolds/contigs larger than 1kb. Taxonomy icon Database Center for Life Science licensed under CC Attribution2.1 Japan.

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The Rockefeller University » Brivanlou Lab » Laboratory of Stem Cell Biology and Molecular Embryology

Saturday, August 15, 2015. Laboratory of Stem Cell Biology and Molecular Embryology. Ali H Brivanlou, Ph.D. Robert and Harriet Heilbrunn Professor. Laboratory of Stem Cell Biology and Molecular Embryology. Dr Brivanlou's laboratory was among the first to work directly in hESCs. With private support from the Juvenile Diabetes Research Foundation, Dr. Brivanlou and colleagues derived several hESC lines, called RUES1, 2 and 3 (Rockefeller University Embryonic Stem Cell Lines 1, 2 and 3). The Rockefeller Uni...

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