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Xia LabWelcome to Xia Lab
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Welcome to Xia Lab
http://www.xialabresearch.com/
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Welcome to Xia Lab
NetworkAnalyst
http://www.networkanalyst.ca/faces/docs/FaqView.xhtml
Network-based visual analytics for gene expression profiling, meta-analysis and interpretation. Frequently Asked Questions (FAQs). What are the general steps in network analysis from gene expression data? What is the data format accepted by NetworkAnalyst? What if my microarray platform or organism is not supported? What does gene-level summarization mean? How should I choose a suitable normalization procedure? I received the error message "no residual degrees of freedom", what should I do? Can I view my...
NetworkAnalyst
http://www.networkanalyst.ca/faces/docs/About.xhtml
Network-based visual analytics for gene expression profiling, meta-analysis and interpretation. NetworkAnalyst has been developed as an easy-to-use and high-performance web-based program for biological network analysis and visualization. It also features several other unique statistics and visualization methods for omics data exploration. The long-term goal of the NetworkAnalyst project is to become a statistical and network-based systems biology platform. 10, 823 844. 41, W63-W70. ( meta-analysis. Limma...
NetworkAnalyst
http://www.networkanalyst.ca/faces/docs/Tutorial.xhtml
Network-based visual analytics for gene expression profiling, meta-analysis and interpretation. Please make sure that you have read our Nature Protocol paper " NetworkAnalyst - integrative approaches for protein protein interaction network analysis and visual exploration. We also provide step-by-step screenshot tutorials for several common analysis paths, as described below:. Overview of the main features and design of NetworkAnalyst. Xia Lab @ McGill University. Your session is about to expire!
NetworkAnalyst
http://www.networkanalyst.ca/faces/docs/UpdateHistory.xhtml
Network-based visual analytics for gene expression profiling, meta-analysis and interpretation. Fixed ID mapping issue with STRING database ( 01/23/2017. Fixed the issue with SIF file generation ( 01/16/2017. Fixed issue with PPI mapping for fruitfly ( 01/10/2017. Added support for Venn diagram visual analytics ( 12/9/2016. Added support for gene-TF. Interactions based on ENCODE, JASPAR and ChEA ( 12/9/2016. Added support for gene-chemical. Added support for protein-drug interactions ( 12/5/2016. Added s...
NetworkAnalyst
http://www.networkanalyst.ca/faces/docs/DataFormat.xhtml
Network-based visual analytics for gene expression profiling, meta-analysis and interpretation. NetworkAnalyst provides multiple example datasets to illustrate data formats as well as for testing purposes. You can directly select and test these datasets using the Try Examples. Dialog in each module. Alternatively, You can download these datasets below. A 99 gene signature of human endotoxin tolerance, ID type: Entrez. ( download here. Three example datasets created from three colon cancer gene expression...
NetworkAnalyst
http://www.networkanalyst.ca/faces/home.xhtml
Network-based visual analytics for gene expression profiling, meta-analysis and interpretation. WARNING: NetworkAnalyst requires a modern web browser that supports Javascript and HTML5. Your browser has been found to be incompatible with the requirement. NetworkAnalyst has been tested under Google Chrome (5.0 ), Firefox (3.0 ), and Internet Explorer (9.0 ). Click on an input area below to start. A list of genes or proteins. Multiple gene expression data. A single gene expression data. Support limma, edgeR.
MetaboAnalyst
http://www.metaboanalyst.ca/faces/docs/UpdateHistory.xhtml
This may take a while to complete, please wait. Your session is about to expire! You will be logged off in. Do you want to continue your session? Yes, keep working. No, log off. Added support for sparse PLS-DA. Minor bug fix and performance tuning ( 09/15/2016. Fixed the issue for t-tests plotting ( 09/09/2016. Added support for quantile normalization ( 08/29/2016. Improved name mapping functions for common metabolite names ( 08/18/2016. Joint-pathway analysis was back to work ( 08/01/2016. Minor bug fix...
MetaboAnalyst
http://www.metaboanalyst.ca/faces/ModuleView.xhtml
This may take a while to complete, please wait. Your session is about to expire! You will be logged off in. Do you want to continue your session? Yes, keep working. No, log off. Please choose a functional module to proceed:. This module supports pathway analysis (integrating enrichment analysis and pathway topology analysis) and visualization for 21 model organisms, including Human, Mouse, Rat, Cow, Chicken, Zebrafish, Arabidopsis thaliana, Rice, Drosophila, Malaria, S. cerevisae, E.coli. and...This modu...
MetaboAnalyst
http://www.metaboanalyst.ca/MetaboAnalyst/faces/docs/Format.xhtml
This may take a while to complete, please wait. Your session is about to expire! You will be logged off in. Do you want to continue your session? Yes, keep working. No, log off. Example datasets for downloading, including :. Compound concentration data - cow, four groups ( download. Compound concentration data - human, two groups ( download. Binned NMR/MS spectra data ( download. Processed peak intensity table ( download. Time-series peak intensity data ( download. Peak lists / Spectra. In addition, the ...
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Xia Lab Website
Our laboratory uses zebrafish. As a model system. To elucidate the molecular pathways relevant to Presenilin. PS) biology and their implication in the pathogenesis of Alzheimer's disease and other CNS disorders. Our goals are to understand the molecular mechanism of the PS-dependent intramembrane cleavage of transmembrane proteins, to key regulators. Controlling post-proteolysis gene expression, and to establish a zebrafish model. Harvard Institute of Medicine. To Harvard Institute of Medicine.
Welcome toThe Xia Lab - Department of Radiation Oncology - The Ohio State University Comprehensive Cancer Center
The Xia Lab -. Department of Radiation Oncology -. The Ohio State University Comprehensive Cancer Center.
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