xmipp.cnb.csic.es

WebHome < Xmipp < TWiki

X-Window-based Microscopy Image Processing Package. Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy. If you have used Xmipp in your work, please cite our papers as given in the List Of References. Quick introduction to Xmipp. Good starting point to try out the new version. You will know the first steps to create a project and an overview of the whole workflow. Xmipp 3.0 world tour. Interactomic data for quaternary structure modelling.

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WebHome < Xmipp < TWiki | xmipp.cnb.csic.es Reviews

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X-Window-based Microscopy Image Processing Package. Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy. If you have used Xmipp in your work, please cite our papers as given in the List Of References. Quick introduction to Xmipp. Good starting point to try out the new version. You will know the first steps to create a project and an overview of the whole workflow. Xmipp 3.0 world tour. Interactomic data for quaternary structure modelling.

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2 documentation

3 user

4 developer

5 report

6 bugs

7 feature request

8 mailing list

9 team

10 history

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WebHome < Xmipp < TWiki | xmipp.cnb.csic.es Reviews

https://xmipp.cnb.csic.es

X-Window-based Microscopy Image Processing Package. Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy. If you have used Xmipp in your work, please cite our papers as given in the List Of References. Quick introduction to Xmipp. Good starting point to try out the new version. You will know the first steps to create a project and an overview of the whole workflow. Xmipp 3.0 world tour. Interactomic data for quaternary structure modelling.

INTERNAL PAGES

xmipp.cnb.csic.es

1

FAQ < Xmipp < TWiki

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/FAQ

Below, we have listed the most frequently asqued questions about Xmipp package as we receive them from users. If you did not find any answer to your doubt in the Documentation. Section and it is not solved here, then let us know. Is XMIPP for free? My favorite flavor of Linux isn't on the list of supported distributions. Will you support it? Can I run XMIPP in a virtual machine? I have developed some algorithms that could be useful, may I collaborate developing for XMIPP? Where is the center of an image?

2

ListOfProgramsv3 < Xmipp < TWiki

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/ListOfProgramsv3

List of all Xmipp programs v3.0. Options that are common to all Xmipp's programs. Description of most commonly used files by Xmipp's programs. Search the programs help and descriptions. Browse files in a directory. Run commands in a parallel environment. Visualize the projections as an angular distribution. Create an Xmipp project. Display images, volumes, stacks, metadatas.etc, using ImageJ. Sort the images in a cluster according to their z-score in a PCA. Compare two sets of classes. Correct for the ph...

3

Report < Xmipp < TWiki

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/Report

Help us to improve Xmipp. Xmipp improvements are possible due to users feedback. So, feel free to report bugs, request new features or just simply comment about things that can be improved. You can also subscribe to our mailing list, post questions and keep updated about the package. Please take a look to this list before reporting a bug. Request a new feature. Browse Xmipp mailing list. Subscribe Xmipp mailing list. For any other comment or question send us a mail.

4

Documentation < Xmipp < TWiki

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/Documentation

Download Xmipp for free and install it on any UNIX-like machine. First steps to create your. Follow introductory courses and video tutorials. Give us your feedback. Report bugs, wish features or subscribe to mailing list. List of programs 3.0. Review the list of. List of programs 3.1. Review the list of. Learn more about the use of. Detailed description of GUI visualization tools. Documentation and resources for programmers. Xmipp 2.4 documentation. Find the old version documentation.

5

DevelopersStuff < Xmipp < TWiki

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/DevelopersStuff

Complete references to modules, classes and functions. Libraries for accesing emx files. Learn how to use the Xmipp core classes:. MDLabel, MDQuery, etc. Use of the classes for parallelization with Threads and MPI. Extending JNI and Python bindings. This will show you the. Of the package structure. Programming with Python and Java. Using Xmipp libraries from other programming languages. Create tests for functions and programs. Details to think of in between big versions release. Review most used git.

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unfuzzy.wordpress.com

Estructura UNFUZZY v2 | UNFUZZY v2

https://unfuzzy.wordpress.com/2007/02/07/hasta-el-060207

Bitacora de trabajo en UNFUZZY v2. Posted febrero 7, 2007. El desarrollo de UNFUZZY v2 se ha dividido en dos modulos, con el fin de separarlas bastante e integrarlas al final del proyecto. Las partes son: ambiente de desarrollo grafico y algoritmos de logica difusa. En cuanto a los algoritmos de logica difusa se ha avanzado con los algoritmos de entrenamiento teniendo en C el metodo de wang-mendel tambien llamado universos fijos. A continuacion se muestra un pantallazo con la estructura del software.

unfuzzy.wordpress.com

Fase de planeación y elaboración | UNFUZZY v2

https://unfuzzy.wordpress.com/2007/02/07/diseno-unfuzzy-v2

Bitacora de trabajo en UNFUZZY v2. Fase de planeación y elaboración. Posted febrero 7, 2007. Este proyecto tiene por objeto crear una nueva versión del software UNFUZZY 1.2 con una interfaz gráfica más amigable incorporando una metodología de diseño para sistemas de lógica difusa y basándose en un lenguaje de control difuso utilizado internacionalmente. Estudiantes e investigadores en el campo de la lógica difusa. Realizar ejemplos de aplicación de lógica difusa demostrando la versatilidad de UNFUZZY v2.

unfuzzy.wordpress.com

Fuzzy Control Language Parser | UNFUZZY v2

https://unfuzzy.wordpress.com/2008/05/25/fuzzy-control-language-parser

Bitacora de trabajo en UNFUZZY v2. Fuzzy Control Language Parser. Posted mayo 25, 2008. I have created a parser for the FCL (Fuzzy Control Language) using the Flex and Bison tools. The program can scan a file written it using the standard and verify it syntax. In the (near) future this parser will be added to the UNFUZZY v2 ( http:/ unfuzzy.sourceforge.net. Program I’m creating, and will increase the functionality for Free Fuzzy Logic Library ( http:/ ffll.sourceforge.net. Laquo; Proyecto reactivado.

emg.nysbc.org

Appion Home - Appion - Electron Microscopy Group

http://emg.nysbc.org/redmine/projects/appion/wiki/Appion_Home

Appion Main Page ¶. Appion is a "pipeline" for processing and analysis of EM images. Appion is integrated with Leginon. The underlying packages integrated into Appion include EMAN. These packages must be acknowledged by appropriate citations when used within Appion. Appropriate citations are provided on the individual pages in Appion as well as here. Download Appion ¶. Follow the Appion installation instructions. To download and install Appion. Appion User Manual ¶. A description of Appion. Stagg, S....

unfuzzy.wordpress.com

Ciclo de desarrollo 1 | UNFUZZY v2

https://unfuzzy.wordpress.com/2007/02/07/ciclo-de-desarrollo-1

Bitacora de trabajo en UNFUZZY v2. Ciclo de desarrollo 1. Posted febrero 7, 2007. El ciclo de desarrollo 1, concerniento al caso de usos: Disenar FLS usando FCL ha sido terminado. Se pueden apreciar imagenes de el primer prototipo ejecutado en GNU/Linux y en Windows. Funciones de coloreo para las palabar clave del Fuzzy Control Language. Funciones de cortar, copiar, pegar, seleccionar todo, funcionando adecuadamente. Funciones de nuevo, abrir, guardar etc…. Funciones de impresion funcionando. Notificarme...

unfuzzy.wordpress.com

Proyecto reactivado | UNFUZZY v2

https://unfuzzy.wordpress.com/2008/04/23/proyecto-reactivado

Bitacora de trabajo en UNFUZZY v2. Posted abril 23, 2008. El desarrollo de UNFUZZY v2, estuvo detenido por un poco de tiempo, pero es grato para mi decir que ha sido reactivado. Aunque aun no esta listo para ser publicado, quiero informar que las siguientes funciones han sido implementadas y probadas:. Entrenamiento de sistemas de logica difusa por el metodo de Wang and Mendel. Autodefinicion de reglas, por metodos algebraicos. Interfaz gráfica amigable y sencilla de usar. Entre otras pequeñas cosas.

unfuzzy.wordpress.com

Acerca | UNFUZZY v2

https://unfuzzy.wordpress.com/about

Bitacora de trabajo en UNFUZZY v2. UNFUZZY v2 es la segunda version del software para el dise no, simulacion y analisis de sistemas de logica difusa, que en su primera version estuvo desarrollada por el Ing. Oscar German Duarte como Tesis de Maestria en Automatizacion Industral. De la misma forma yo (Ibraim Yesid Hernandez) estoy desarrollando la nueva version como Tesis de Maestria en Automatizacion Industrial en la Universidad Nacional de Colombia. UNIVERSIDAD NACIONAL DE COLOMBIA. 4 comments so far.

unfuzzy.wordpress.com

Ciclo de desarrollo 2 | UNFUZZY v2

https://unfuzzy.wordpress.com/2007/02/27/ciclo-de-desarrollo-2

Bitacora de trabajo en UNFUZZY v2. Ciclo de desarrollo 2. Posted febrero 27, 2007. Se han realizado avances en el ciclo de desarrollo 2, simultaneamente con el 3 y 4. Este ciclo de desarrollo esta enfocado principalmente en la visualizacion grafica de la aplicacion, para el diseno de los sistemas de logica difusa por medio de un lenguaje grafico. Permite crear elementos como entradas, salidas, sistemas de inferencias y texto. Aplicando sus propiedades. Permite mover y conectar los elementos entre si.

biocomp.cnb.csic.es

Software – Biocomputing Unit

http://biocomp.cnb.csic.es/software

XMIPP: A suite of image processing programs for single-particle 3D Electron Microscopy & more. Scipion: An image processing framework for 3D Electron Microscopy. Dimero: Data Integration for Molecular Reconstruction. 3DEM Benchmark: Automatic and standardized benchmarking of image processing applications. Electron Microscopy Exchange: Standardize information exchange in single-particle between different 3D-EM software packages. 3DEM Methods: An extensive repository of 3D Electron Microscopy methods.

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xmipp.cnb.csic.es

WebHome < Xmipp < TWiki

X-Window-based Microscopy Image Processing Package. Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy. If you have used Xmipp in your work, please cite our papers as given in the List Of References. Quick introduction to Xmipp. Good starting point to try out the new version. You will know the first steps to create a project and an overview of the whole workflow. Xmipp 3.0 world tour. Interactomic data for quaternary structure modelling.

xmipp.com

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