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www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab

Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Nematode and Neglected Genomics. The Blaxter lab website, databases and services,. Please use the navigation bars above to tour this site. NEMBASE is a comprehensive Nematode Transcriptome Database. Including 63 nematode species, over 600,000 ESTs and over 250,000 proteins. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.

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www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab | xyala.cap.ed.ac.uk Reviews
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Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Nematode and Neglected Genomics. The Blaxter lab website, databases and services,. Please use the navigation bars above to tour this site. NEMBASE is a comprehensive Nematode Transcriptome Database. Including 63 nematode species, over 600,000 ESTs and over 250,000 proteins. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.
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1 nematodes org
2 edinburgh genomics
3 959 nematode genomes
4 nematode genome sequences
5 research projects
6 software tools
7 lab info
8 lab wiki
9 genomics databases
10 nembase4
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nematodes org,edinburgh genomics,959 nematode genomes,nematode genome sequences,research projects,software tools,lab info,lab wiki,genomics databases,nembase4,tardigrada,hypsibius dujardini,earthworm,lumbricus rubellus,molluscdb,arthropoddb,version 4 0
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www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab | xyala.cap.ed.ac.uk Reviews

https://xyala.cap.ed.ac.uk

Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Nematode and Neglected Genomics. The Blaxter lab website, databases and services,. Please use the navigation bars above to tour this site. NEMBASE is a comprehensive Nematode Transcriptome Database. Including 63 nematode species, over 600,000 ESTs and over 250,000 proteins. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.

INTERNAL PAGES

xyala.cap.ed.ac.uk xyala.cap.ed.ac.uk
1

Web interface for the MolluscDB PartiGene database

http://xyala.cap.ed.ac.uk/NeglectedGenomes/MOLLUSCA

A web interface for the MolluscDB PartiGene. Curated by Mark Blaxter. For a list of the species analysed. Retrieve a specific cluster. Enter a PartiGene-style cluster ID (e.g. DPC00003) or an EST sequence identifier (e.g.AF366559). Search the BLAST annotation. Lymnaea stagnalis, the pond snail. Biomphalaria glabrata, the ram's horn snail. Crassostrea gigas, an oyster. Crassostrea virginica, an oyster. Dreissena polymorpha, the zebra mussel. Mytilus edulis, the edible mussel.

2

www.nematodes.org - NEMBASE4

http://xyala.cap.ed.ac.uk/nembase4

At www.nematodes.org. In the Blaxter Lab. Institute of Evolutionary Biology. NEMBASE is a resource for nematode transcriptome analysis, and a research tool for nematode biology, drug discovery and vaccine design. NEMBASE4 was constructed by Ben Elsworth using the PartiGene suite of tools, with assistance from James Wasmuth and Mark Blaxter. Any questions, please contact Mark Blaxter. Searching NEMBASE4 and retrieving data. You can search NEMBASE4 using the links on the navigation bar to the left. PartiGe...

3

BaNG Bioinformatics

http://xyala.cap.ed.ac.uk/bioinformatics/index.shtml

Nematodes.org - Bioinformatics. Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Transcriptome Analysis - PartiGene. DNA Barcoding - MOTU Definition Tools. PartiGene tools, including CLOBB, annot8r and prot4EST. DNA barcoding - jMOTU. The Partigene Suite of transcriptome analysis tools. A databasing tool for EST datasets current version 3.0.6 (May 2011). A tool for processing EST capillary sequencing traces.

4

www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab

http://xyala.cap.ed.ac.uk/downloads/ashdieback/index.shtml

Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Sequencing the ash dieback fungus and assisting in efforts to identify resistance genes in ash. For updates and data across the whole NORNEX project please see. The Open Ash Dieback project. Raw sequencing reads from genome sequencing of the ash pathogen. Data and descriptions of genome assemblies from. H 2001 11 1.CLC. H 2008 125 2.CLC. H 2008 139 1.CLC.

5

The ARTHROPODA PartiGene Databases

http://xyala.cap.ed.ac.uk/NeglectedGenomes/ARTHROPODA

Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Nematode Genomes @ Edinburgh. Evolution and diversity of Nematodes. The ARTHROPODA PartiGene Databases. To aid searching we have split the interface between four class-based views:. Amongst other analyses, we have included Alfried Vogler's lab's PartiGene analysis of 30 different arthropod species ESTs. A separate access point. For that dataset is also available.

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www.nematodes.org - NEMBASE4

http://xyala2.bio.ed.ac.uk/nembase4

At www.nematodes.org. In the Blaxter Lab. Institute of Evolutionary Biology. NEMBASE is a resource for nematode transcriptome analysis, and a research tool for nematode biology, drug discovery and vaccine design. NEMBASE4 was constructed by Ben Elsworth using the PartiGene suite of tools, with assistance from James Wasmuth and Mark Blaxter. Any questions, please contact Mark Blaxter. Searching NEMBASE4 and retrieving data. You can search NEMBASE4 using the links on the navigation bar to the left. PartiGe...

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www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab

Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Nematode and Neglected Genomics. The Blaxter lab website, databases and services,. Please use the navigation bars above to tour this site. NEMBASE is a comprehensive Nematode Transcriptome Database. Including 63 nematode species, over 600,000 ESTs and over 250,000 proteins. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.

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www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab

Nematode and Neglected Genomics. The Blaxter Lab, Institute of Evolutionary Biology. School of Biological Sciences. The University of Edinburgh. Nematode and Neglected Genomics. The Blaxter lab website, databases and services,. Please use the navigation bars above to tour this site. NEMBASE is a comprehensive Nematode Transcriptome Database. Including 63 nematode species, over 600,000 ESTs and over 250,000 proteins. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.

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