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Gold Standard for SNP Nomenclature

Gold Standard for SNP Nomenclature. Thursday, August 21, 2008. I've Hit The Heap Space Limit in Java. So the past few days I had been writing my FASTA parser. I did a quick and dirty one which loads a FASTA file, reads only the headers and serializes them in a persistent object. As FASTA files are really huge e.g rs ch1.fas is 1.3GB in size, I had to increase the heap memory space. This is the first time I ever had to use a 1GB Java heap space, i.e -Xmx1024m. Tuesday, August 19, 2008. CCCAGCTGTA TGGAGCGT...

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Gold Standard for SNP Nomenclature | yi-fyp.blogspot.com Reviews

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Gold Standard for SNP Nomenclature. Thursday, August 21, 2008. I've Hit The Heap Space Limit in Java. So the past few days I had been writing my FASTA parser. I did a quick and dirty one which loads a FASTA file, reads only the headers and serializes them in a persistent object. As FASTA files are really huge e.g rs ch1.fas is 1.3GB in size, I had to increase the heap memory space. This is the first time I ever had to use a 1GB Java heap space, i.e -Xmx1024m. Tuesday, August 19, 2008. CCCAGCTGTA TGGAGCGT...

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Gold Standard for SNP Nomenclature | yi-fyp.blogspot.com Reviews

https://yi-fyp.blogspot.com

Gold Standard for SNP Nomenclature. Thursday, August 21, 2008. I've Hit The Heap Space Limit in Java. So the past few days I had been writing my FASTA parser. I did a quick and dirty one which loads a FASTA file, reads only the headers and serializes them in a persistent object. As FASTA files are really huge e.g rs ch1.fas is 1.3GB in size, I had to increase the heap memory space. This is the first time I ever had to use a 1GB Java heap space, i.e -Xmx1024m. Tuesday, August 19, 2008. CCCAGCTGTA TGGAGCGT...

INTERNAL PAGES

yi-fyp.blogspot.com

1

Gold Standard for SNP Nomenclature: August 2008

http://yi-fyp.blogspot.com/2008_08_01_archive.html

Gold Standard for SNP Nomenclature. Thursday, August 21, 2008. I've Hit The Heap Space Limit in Java. So the past few days I had been writing my FASTA parser. I did a quick and dirty one which loads a FASTA file, reads only the headers and serializes them in a persistent object. As FASTA files are really huge e.g rs ch1.fas is 1.3GB in size, I had to increase the heap memory space. This is the first time I ever had to use a 1GB Java heap space, i.e -Xmx1024m. Tuesday, August 19, 2008. CCCAGCTGTA TGGAGCGT...

2

Gold Standard for SNP Nomenclature: About this Blog

http://yi-fyp.blogspot.com/2008/08/about-this-blog.html

Gold Standard for SNP Nomenclature. Wednesday, August 6, 2008. This blog shall be used to easily log the progress of my FYP,. The Development of a Gold Standard for Single Nucleotide Polymorphism Nomenclature in Biomedical Sciences Applications Using Clinical Bioinformatics Techniques". As I've done similar blogging during my ATAP, I clearly see the benefits of having one. This is a means by which my supervisors can keep track of my progress, and also a scratch pad for my interim and final report.

3

Gold Standard for SNP Nomenclature: FASTA Format

http://yi-fyp.blogspot.com/2008/08/what-ifasta-format-in-brief.html

Gold Standard for SNP Nomenclature. Tuesday, August 19, 2008. An Example of Fasta Format :. Taxid=9606 snpclass=1 alleles='C/T' mol=Genomic build=130. CCCAGCTGTA TGGAGCGTGG GTGCCAGTGG TGGCTCTAGA ATTCCttttt cttttttgag acagtctcac tctgttgcct aggctggagt gcagtggcgt gatcttggct cacttcaacc tccgcctcct gggttcaagc aattcttgtg cctcagcctc ccaagtagcc tgggattaca ggtgtgtgcc accatgccca ggtaattttt tctattttta ctagagatgg ggttttgctg tgttggccag gctggtctca aactcctggc ctcatgtgat ctgtcagcct tggcctccca aagtcctggg ataacaggtg tgagcc...

4

Gold Standard for SNP Nomenclature: Request to LSM2104 and LSM3241 Webcasts

http://yi-fyp.blogspot.com/2008/08/request-to-lsm2104-and-lsm3241-webcasts.html

Gold Standard for SNP Nomenclature. Wednesday, August 6, 2008. Request to LSM2104 and LSM3241 Webcasts. Last week I've requested for access to LSM2104/CZ2251. Essential Bioinformatics and Biocomputing. Dr Tan Tin Wee was very kind to grant and facilitate my access to both of his modules. Subscribe to: Post Comments (Atom). Ive Hit The Heap Space Limit in Java. Request to LSM2104 and LSM3241 Webcasts. IUPAC Code Table (SNP Placeholders). National Center for Biotechnology Information. FASTA Format, NCBI.

5

Gold Standard for SNP Nomenclature: Introduction to LSM2104

http://yi-fyp.blogspot.com/2008/08/introduction-to-lsm2104.html

Gold Standard for SNP Nomenclature. Friday, August 8, 2008. LSM2104 / CZ2251 Lecture 1. Christopher Baker (I2R researcher) on common problems for bioinformaticists (Lecture 1, slide 57 - 59). Chart depicting GenBank database growth:. Source: http:/ web.archive.org/web/20061222223107/http:/ www.ncbi.nlm.nih.gov/Genbank/index.html. Interesting issues pointed out by Christopher Baker. There has been exponential growth of data deposited in databases" (See chart above). Subscribe to: Post Comments (Atom).

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Gold Standard for SNP Nomenclature

Gold Standard for SNP Nomenclature. Thursday, August 21, 2008. I've Hit The Heap Space Limit in Java. So the past few days I had been writing my FASTA parser. I did a quick and dirty one which loads a FASTA file, reads only the headers and serializes them in a persistent object. As FASTA files are really huge e.g rs ch1.fas is 1.3GB in size, I had to increase the heap memory space. This is the first time I ever had to use a 1GB Java heap space, i.e -Xmx1024m. Tuesday, August 19, 2008. CCCAGCTGTA TGGAGCGT...

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