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YPA » Yeast Promoter Atlas

Tlas) is a repository of promoter features in Saccharomyces cerevisiae. It intergrates various resources (including promoter sequences, TSSs, TATA boxes,. Nucleosome occupancy, DNA bendability, TF-TF interaction, and gene expression data) and provides a comprehensive view of the promoter regions. Please check the settings. Ex: YBL087C, RPL23A, or RPL*). Ex: II:60k, II:60000, 2:60000, YBL087C or RPL23A). TFBS (transcription factor binding site). Ex: II:60k II:61k or YBL087C or RPL23A). How to cite YPA.

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YPA » Yeast Promoter Atlas | ypa.csbb.ntu.edu.tw Reviews
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Tlas) is a repository of promoter features in Saccharomyces cerevisiae. It intergrates various resources (including promoter sequences, TSSs, TATA boxes,. Nucleosome occupancy, DNA bendability, TF-TF interaction, and gene expression data) and provides a comprehensive view of the promoter regions. Please check the settings. Ex: YBL087C, RPL23A, or RPL*). Ex: II:60k, II:60000, 2:60000, YBL087C or RPL23A). TFBS (transcription factor binding site). Ex: II:60k II:61k or YBL087C or RPL23A). How to cite YPA.
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1 statistics
2 about us
3 east p
4 romoter a
5 tfbss
6 before using ypa
7 query ypa
8 advanced search
9 browse ypa
10 by genomic coordinate
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YPA » Yeast Promoter Atlas | ypa.csbb.ntu.edu.tw Reviews

https://ypa.csbb.ntu.edu.tw

Tlas) is a repository of promoter features in Saccharomyces cerevisiae. It intergrates various resources (including promoter sequences, TSSs, TATA boxes,. Nucleosome occupancy, DNA bendability, TF-TF interaction, and gene expression data) and provides a comprehensive view of the promoter regions. Please check the settings. Ex: YBL087C, RPL23A, or RPL*). Ex: II:60k, II:60000, 2:60000, YBL087C or RPL23A). TFBS (transcription factor binding site). Ex: II:60k II:61k or YBL087C or RPL23A). How to cite YPA.

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ypa.csbb.ntu.edu.tw ypa.csbb.ntu.edu.tw
1

YPA » Help

http://ypa.csbb.ntu.edu.tw/help.html

Promoter features in YPA. TFBS settings in YPA. Nucleosome occupancy settings in YPA. Structural feature settings in YPA. DNA bendability settings in YPA. Yeast Promoter Atlas (YPA). Aims to collect comprehensive promoter features in Saccharomyces cerevisiae. It integrates nine kinds of promoter features. Etc), YPA collects not only TFBSs but also many other promoter features, which can help biologists study transcriptional regulation. Promoter features in YPA. The transcribed regions were identified usi...

2

YPA » Yeast Promoter Atlas

http://ypa.csbb.ntu.edu.tw/index.html

Tlas) is a repository of promoter features in Saccharomyces cerevisiae. It intergrates various resources (including promoter sequences, TSSs, TATA boxes,. Nucleosome occupancy, DNA bendability, TF-TF interaction, and gene expression data) and provides a comprehensive view of the promoter regions. Please check the settings. Ex: YBL087C, RPL23A, or RPL*). Ex: II:60k, II:60000, 2:60000, YBL087C or RPL23A). TFBS (transcription factor binding site). Ex: II:60k II:61k or YBL087C or RPL23A). How to cite YPA.

3

YPA » News

http://ypa.csbb.ntu.edu.tw/news.html

YPA version 1.6 is released. Posted at June 30, 2012 by Tien-Hao Chang (Darby Chang). YPA version 1.5 is released. In the revision of YPA 1.1. We have identified hundreds of errors in our TATA boxes. Our TATA boxes were retrieved from Basehoar et al. In 2004. Basehor et al. S work has marked the position as well as provided the sequence of each TATA box. However, we found 577 TATA boxes whose positions and sequences were inconsitent. In the revision of YPA 1.1. To see the detailed numbers of this release.

4

YPA » Settings

http://ypa.csbb.ntu.edu.tw/do?act=settings

Of interest. Data (such as. Not satisfied the following setting will not be shown in YPA. 1TFBS only (weak direct). 2TFB only (strong direct). 10TFBS and TFB and TFKO. 11TFBS and (TFB or TFKO). 12TFKO and (TFB or TFBS). 13TFBS or TFB or TFKO. Having the spcified data. For example, TFBS only. Shown in YPA must have. Data TFBS or TFB. Shown in YPA must have either. Data TFBS and (TFB or TFKO). Shown in YPA must have. Data and have either. SCPD (Zhu and Zhang, 1999). YEASTRACT (Teixeira et al. The highest 1...

5

YPA » Help

http://ypa.csbb.ntu.edu.tw/about.html

YPA is co-developed and -maintained by the two groups led by Dr. Tien-Hao Chang (Darby Chang) and Dr. Wei-Sheng Wu. Special Interest Group on Molecular Biomedical Informatics (SIGMBI). Computational Systems Biology Lab. Department of Electrical Engineering, National Cheng Kung University, Taiwan. Tien-Hao Chang (Darby Chang). Homepage: mbi.ee.ncku.edu.tw. E-mail: darby@ee.ncku.edu.tw. Homepage: http:/ myweb.ncku.edu.tw/ wessonwu/Wei-Sheng%20Wu.htm.

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