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Hongyu Zhao's Lab | Yale Center for Statistical Genomics and Proteomics

Hongyu Zhao's Lab. Yale Center for Statistical Genomics and Proteomics. Our group develops mathematical, statistical, and computational methods to address scientific problems in molecular biology and genomics. The Principal Investigator is Prof. Hongyu Zhao. Some of our current research topics:. Next generation sequencing, including DNA and Exome seq, RNA seq, ChIP-seq and Metagenomics. EQTL mapping in different organisms. Network modeling and reconstruction. Please go to the Software section.

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Hongyu Zhao's Lab | Yale Center for Statistical Genomics and Proteomics | zhaocenter.org Reviews

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Hongyu Zhao's Lab. Yale Center for Statistical Genomics and Proteomics. Our group develops mathematical, statistical, and computational methods to address scientific problems in molecular biology and genomics. The Principal Investigator is Prof. Hongyu Zhao. Some of our current research topics:. Next generation sequencing, including DNA and Exome seq, RNA seq, ChIP-seq and Metagenomics. EQTL mapping in different organisms. Network modeling and reconstruction. Please go to the Software section.

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8 pathway based genomics analysis

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Hongyu Zhao's Lab | Yale Center for Statistical Genomics and Proteomics | zhaocenter.org Reviews

https://zhaocenter.org

Hongyu Zhao's Lab. Yale Center for Statistical Genomics and Proteomics. Our group develops mathematical, statistical, and computational methods to address scientific problems in molecular biology and genomics. The Principal Investigator is Prof. Hongyu Zhao. Some of our current research topics:. Next generation sequencing, including DNA and Exome seq, RNA seq, ChIP-seq and Metagenomics. EQTL mapping in different organisms. Network modeling and reconstruction. Please go to the Software section.

INTERNAL PAGES

zhaocenter.org

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GenoWAP website is ready | Hongyu Zhao's Lab

http://zhaocenter.org/genowap-website-is-ready

Hongyu Zhao's Lab. Center for Statistical Genomics and Proteomics. GenoWAP website is ready. The GenoWAP paper will be submitted soon. The website is now officially online at genocanyon.med.yale.edu/GenoWAP. Feel free to check out the software and let us know what you think. This entry was posted in Software. April 14, 2015. GenoCanyon server is online. GenoWAP website is ready. April 14, 2015. GenoCanyon server is online. April 5, 2015. March 28, 2014. Updates: New Website Under Construction!

2

GenoCanyon server is online | Hongyu Zhao's Lab

http://zhaocenter.org/genocanyon-server-is-online

Hongyu Zhao's Lab. Center for Statistical Genomics and Proteomics. GenoCanyon server is online. To check out the GenoCanyon server and web application. Please contact Qiongshi (qiongshi.lu@yale.edu) if you have any question about the method or the server. Our paper is currently under review. The preprint. Is available on BioArchive. This entry was posted in Software. April 5, 2015. FacPad: Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment. April 14, 2015.

3

Updates: New Website Under Construction! | Hongyu Zhao's Lab

http://zhaocenter.org/hello-world

Hongyu Zhao's Lab. Center for Statistical Genomics and Proteomics. Updates: New Website Under Construction! We’re making our new site and looking good at the same time! This entry was posted in Other. February 27, 2014. FacPad: Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment →. GenoWAP website is ready. April 14, 2015. GenoCanyon server is online. April 5, 2015. March 28, 2014. Updates: New Website Under Construction! February 27, 2014.

4

Posts | Hongyu Zhao's Lab | Center for Statistical Genomics and Proteomics

http://zhaocenter.org/posts

Hongyu Zhao's Lab. Center for Statistical Genomics and Proteomics. GenoWAP website is ready. The GenoWAP paper will be submitted soon. The website is now officially online at genocanyon.med.yale.edu/GenoWAP. Feel free to check out the software and let us know what you think. This entry was posted in Software. April 14, 2015. GenoCanyon server is online. To check out the GenoCanyon server and web application. Please contact Qiongshi (qiongshi.lu@yale.edu) if you have any question about the met...FacPad: B...

5

Publications | Hongyu Zhao's Lab

http://zhaocenter.org/publications

Hongyu Zhao's Lab. Center for Statistical Genomics and Proteomics. 314] M. Goffredo, S. Caprio, A. Feldstein, E. D’Adamo, M. M. Shaw, B. Pierpont, M. Savoye, H. Zhao, A. E. Bale, N. Santoro (2015) Role of the TM6SF2 rs58542926 in the pathogenesis of pediatric fatty liver disease (NAFLD): a multiethnic study. Hepatology, in press. 311] K. Lee, B. Li, H. Zhao (2015) Variable selection via additive conditional independence. Journal of the Royal Statistical Society – Series B, in press. 308] R. Polimanti...

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genocanyon.med.yale.edu

GenoCanyon AboutUs

http://genocanyon.med.yale.edu/GenoCanyon_AboutUs.html

Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA. Program of Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA. Yale Center for Medical Informatics, Yale School of Medicine, New Haven, CT, USA. Lu, Q et al. (2015). A Statistical Framework to Predict Functional Non-Coding Regions in the Human Genome Through Integrated Analysis of Annotation Data. Sci. Rep.

genocanyon.med.yale.edu

GenoWAP

http://genocanyon.med.yale.edu/GenoWAP

Lu Q, Yao X, Hu Y, and Zhao H. (2016). GenoWAP: GWAS signal prioritization through integrated analysis of genomic functional annotation. Lu Q*, Powles R.*, Wang Q., He B., and Zhao H. (2016). Integrative tissue-specific functional annotations in the human genome provide novel insights on many complex traits and improve signal prioritization in genome wide association studies. 12(4): e1005947. (* Equal Contribution). Please read our paper for more details. Global performance in studies of Crohn’s disease.

mengjiechen.com

links - Mengjie Chen --- UNC Chapel Hill

http://www.mengjiechen.com/links.html

Mengjie Chen - - UNC Chapel Hill. Yale Center for Statistical Genomics and Proteomics (My thesis lab). Yale Computational Biology and Bioinformatics (My PhD program). Http:/ cbb.yale.edu/. Yale Department of Statistics. Http:/ statistics.yale.edu/. Http:/ www.r-bloggers.com/. Http:/ www.StatsBlogs.com/. Http:/ normaldeviate.wordpress.com/.

genocanyon.med.yale.edu

GenoSkyline

http://genocanyon.med.yale.edu/GenoSkyline

GenoSkyline is a principled framework to predict tissue-specific functional regions through integrating high-throughput epigenomic annotations. Integrative analysis of GenoSkyline annotations with GWAS summary statistics could systematically identify biologically relevant tissue types and provide novel insights into the genetic basis of human complex traits. 12(4): e1005947. (* Equal Contribution). GenoSkyline-Plus is a comprehensive update of GenoSkyline that incorporates more annotation data into the f...

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Hongyu Zhao's Lab | Yale Center for Statistical Genomics and Proteomics

Hongyu Zhao's Lab. Yale Center for Statistical Genomics and Proteomics. Our group develops mathematical, statistical, and computational methods to address scientific problems in molecular biology and genomics. The Principal Investigator is Prof. Hongyu Zhao. Some of our current research topics:. Next generation sequencing, including DNA and Exome seq, RNA seq, ChIP-seq and Metagenomics. EQTL mapping in different organisms. Network modeling and reconstruction. Please go to the Software section.

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