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Tingting Zhao's research blog – statistics, bayesian statistics, computing, phylogeneticsstatistics, bayesian statistics, computing, phylogenetics
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MCMC: Hamiltonian Monte Carlo (a.k.a. Hybrid Monte Carlo) – Tingting Zhao's research blog
https://zhaott0416.wordpress.com/2016/03/20/mcmc-hamiltonian-monte-carlo-a-k-a-hybrid-monte-carlo
Tingting Zhao's research blog. Statistics, bayesian statistics, computing, phylogenetics. MCMC: Hamiltonian Monte Carlo (a.k.a. Hybrid Monte Carlo). The following post presents a very good explanation of the intuition of Hamiltonian dynamics and introduction of HMC algorithm. The random-walk behavior of many Markov Chain Monte Carlo (MCMC) algorithms makes Markov chain convergence to a target stationary distribution. Inefficient, resulting in slow m. March 20, 2016. Leave a Reply Cancel reply.
Python code to create trees and its graphical model representation using pydot – Tingting Zhao's research blog
https://zhaott0416.wordpress.com/2016/02/13/229
Tingting Zhao's research blog. Statistics, bayesian statistics, computing, phylogenetics. R Programming and Graphics. Python code to create trees and its graphical model representation using pydot. In this post, I learned the post from the python heaven. Using pydot to create graphs. The following code creates a phylogenetic tree first and then creates its corresponding graphical model representation. The two figures are here:. Phylogenetic tree: treetopology.png. February 13, 2016. February 17, 2016.
How to convert fasta files to nexus files in R – Tingting Zhao's research blog
https://zhaott0416.wordpress.com/2015/06/02/how-to-convert-fasta-files-to-nexus-files-in-r
Tingting Zhao's research blog. Statistics, bayesian statistics, computing, phylogenetics. How to convert fasta files to nexus files in R. Library(seqinr) data = read.fasta( /5000alignsimutree.txt) library(ape) write.nexus.data(data, file= /5000alignsimutree.nexus, format=protein). June 2, 2015. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). You are commenting using your WordPress.com account. ( Log Out.
Difference between prediction intervals and confidence intervals – Tingting Zhao's research blog
https://zhaott0416.wordpress.com/2016/02/12/difference-between-prediction-intervals-and-confidence-intervals
Tingting Zhao's research blog. Statistics, bayesian statistics, computing, phylogenetics. Difference between prediction intervals and confidence intervals. Provides a good explanation about the Prediction interval and confidence interval. I just forwarded it here to keep a record. The original author has many other enlightening posts about forecasting as well, which are interesting to check. February 12, 2016. Leave a Reply Cancel reply. Enter your comment here. Address never made public).
Generating Graph Visualizations with pydot and Graphviz – Tingting Zhao's research blog
https://zhaott0416.wordpress.com/2016/01/05/generating-graph-visualizations-with-pydot-and-graphviz
Tingting Zhao's research blog. Statistics, bayesian statistics, computing, phylogenetics. R Programming and Graphics. Generating Graph Visualizations with pydot and Graphviz. This is a very useful post about how to use pydot to visualize graphical models. Pydot is a python interface for Graphviz. Hi, for my latest college assignment I had to find a way to visualize data that is interrelated. For instance, my application generated the following data:. January 5, 2016. February 6, 2016.
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Tingting Zhao's research blog – statistics, bayesian statistics, computing, phylogenetics
Tingting Zhao's research blog. Statistics, bayesian statistics, computing, phylogenetics. MCMC: Hamiltonian Monte Carlo (a.k.a. Hybrid Monte Carlo). March 20, 2016. R Programming and Graphics. Python code to create trees and its graphical model representation using pydot. February 13, 2016. February 17, 2016. Difference between prediction intervals and confidence intervals. February 12, 2016. February 6, 2016. R Programming and Graphics. Generating Graph Visualizations with pydot and Graphviz. Hi, for my...
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