1001genomes.org

mtweb1.cfans.umn.edu

External Resources

http://mtweb1.cfans.umn.edu/resources/external

M truncatula de novo. National Science Foundation program to support basic research in plant genomics. 1001 Genomes (Arabidopsis Genetic Variation). Project to determine genetic variations in 1001 strains of Arabidopsis thaliana. Genome Project @ JCVI. Legume Information Service (LIS). USDA Resources for the legume research community. Medicago Handbook @ NOBLE foundation. A bioinformatics gateway towards integrative legume biology. Site hosted by: Nevin Young's Lab at University of Minnesota.

archive.plants.ensembl.org

Arabidopsis thaliana - Ensembl Genomes

http://archive.plants.ensembl.org/Arabidopsis_thaliana/Info/Index

Is a small flowering plant that is widely used as a model organism in plant biology. Arabidopsis is a member of the mustard (Brassicaceae) family, which includes cultivated species such as cabbage and radish. Arabidopsis is not of major agronomic significance, but it offers important advantages for basic research in genetics and molecular biology. Has a genome size of 135 Mbp, and a haploid chromosome number of 5. More information and statistics. More information and statistics. What can I find?

medicagohapmap.org

External Resources

http://www.medicagohapmap.org/resources/external

M truncatula de novo. National Science Foundation program to support basic research in plant genomics. 1001 Genomes (Arabidopsis Genetic Variation). Project to determine genetic variations in 1001 strains of Arabidopsis thaliana. Genome Project @ JCVI. Legume Information Service (LIS). USDA Resources for the legume research community. Medicago Handbook @ NOBLE foundation. A bioinformatics gateway towards integrative legume biology. Site hosted by: Nevin Young's Lab at University of Minnesota.

genomevolution.org

Tutorials - CoGepedia

https://genomevolution.org/wiki/index.php/Tutorials

Here you can find tutorials informing you on how to get the most out of CoGe's tools. How to search and assemble genes. How to assemble contig-level de novo assembly using a reference genome using synteney. How to determine the structural changes between genome assemblies. How to do phylogenetics with CoGe. How to download a genome and its annotations. How to find syntenic regions between genomes. What to do with a genome in the early stages of assembly. How to load genomes into CoGe. How to share genomes.

archive.gramene.org

Gramene: Genetic Diversity Database

http://archive.gramene.org/db/diversity/diversity_view

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

splice-bio.com

Most Impressive Large-scale Sequencing Projects | Splice

http://splice-bio.com/most-impressive-large-scale-sequencing-projects

Powered by BioSistemika LLC. MOLECULAR BIOLOGY AND GENETICS. Most Impressive Large-scale Sequencing Projects. June 11, 2015. MOLECULAR BIOLOGY AND GENETICS. From the Human Genome Project and ENCODE, to projects that involve sequencing of millions of human genomes. And were announced by the US Obama Administration and Companies such as Craig Venter’s Human Longevity Inc., 23andMe and the Chinese BGI. And the annotation efforts of HGP. Eg transcripts, promoters and long-range regulatory regions. Is current...

weigelworld.org

Weigelworld - Resources

http://www.weigelworld.org/resources.html

We are happy to share original material that we generated and published - a large number of plasmids and seeds has therefore been donated to the stock centers and/or addgene. When requesting material, please:. First check whether the material is available from NASC. If yes, please request from there. Together with the corresponding digitalized MTA. Signed by an authorized representative of your institution. Provide your full postal address. Vector sequences are available for download here. Our artificial...

weigelworld.org

Weigelworld - People

http://www.weigelworld.org/people.html

Hybrid performance and fitness tradeoffs. Ancient Genomics and Evolution. Epigenetic variation and non-genetic inheritance. The impact of genetic variation on epigenetic differences. Interaction between DNA methylation and transcription. Epigenetic variation and non-genetic inheritance. The impact of genetic variation on epigenetic differences. Interaction between DNA methylation and transcription. 2010 to present / Postdoc / Max Planck Institute for Developmental Biology. Gene expression in hybrid plants.

ensembl.gramene.org

Arabidopsis thaliana - Ensembl Genomes

http://ensembl.gramene.org/Arabidopsis_thaliana/Info/Index

Is a small flowering plant that is widely used as a model organism in plant biology. Arabidopsis is a member of the mustard (Brassicaceae) family, which includes cultivated species such as cabbage and radish. Arabidopsis is not of major agronomic significance, but it offers important advantages for basic research in genetics and molecular biology. Has a genome size of 135 Mbp, and a haploid chromosome number of 5. More information and statistics. More information and statistics. What can I find?