aladyn.escience-lab.org
Aladyn | HomeThe ALADYN server aligns pairs of proteins by matching their internal dynamics. ALADYN identifies the protein regions with similar low-energy modes of structural fluctuations.
http://aladyn.escience-lab.org/
The ALADYN server aligns pairs of proteins by matching their internal dynamics. ALADYN identifies the protein regions with similar low-energy modes of structural fluctuations.
http://aladyn.escience-lab.org/
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https://aladyn.escience-lab.org
The ALADYN server aligns pairs of proteins by matching their internal dynamics. ALADYN identifies the protein regions with similar low-energy modes of structural fluctuations.
aladyn.escience-lab.org
Aladyn | About
http://aladyn.escience-lab.org/about.php
ALADYN carries out pairwise protein alignments on the basis of dynamical criteria. For two given proteins, ALADYN identifies those regions (if any) that sustain similar low-energy modes of internal structural fluctuations. The ALADYN server implements the dynamics-based alignment strategy of ref [1]. The internal fluctuation dynamics of the input proteins is calculated using the the beta-GM elastic network model which was previously validated against atomistic molecular dynamics simulations [2]. ...Dataf...
Aladyn | Home
http://aladyn.escience-lab.org/index.php
ALADYN dynamics-based alignment of proteins. Other Bioinformatics Servers hosted by eLab. Please provide entries via file upload or PDB id. The latter can be optionally followed by the chain identifier, e.g. 3hvgA. Of PDB entry 3hvg. To align the HIV-1 protease and human beta-secretase enter 1aid. In the two PDB code fields. ALADYN: a web server for aligning proteins by matching their large-scale motion. R Potestio; T. Aleksiev; F. Pontiggia; S. Cozzini; C. Micheletti.
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PiSQRD | Home
http://pisqrd.escience-lab.org/index.php
Other Bioinformatics Servers hosted by eLab. Leave empty to decompose entire structure in the file). Captured mobility threshold (%). T Aleksiev, R. Potestio, F.Pontiggia, S. Cozzini and C. Micheletti,. PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. Bioinformatics, 2009 vol. 25, num. 20, pag. 2743-2744. Use beta-Gaussian elastic network model. Use the first. Use the 10 lowest energy modes provided in the following file:. For on-line article on Beta-Gaussian model.
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Aladyn | Home
ALADYN dynamics-based alignment of proteins. Other Bioinformatics Servers hosted by eLab. Please provide entries via file upload or PDB id. The latter can be optionally followed by the chain identifier, e.g. 3hvgA. Of PDB entry 3hvg. To align the HIV-1 protease and human beta-secretase enter 1aid. In the two PDB code fields. ALADYN: a web server for aligning proteins by matching their large-scale motion. R Potestio; T. Aleksiev; F. Pontiggia; S. Cozzini; C. Micheletti.
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