The PiSQRD server subdivides proteins into domains that behave approximately as rigid units in the course of protein structural fluctuations. The best rigid-body decomposition is found using the lowest-energy collective modes of the system
http://pisqrd.escience-lab.org/
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PiSQRD | Home | pisqrd.escience-lab.org Reviews
https://pisqrd.escience-lab.org
The PiSQRD server subdivides proteins into domains that behave approximately as rigid units in the course of protein structural fluctuations. The best rigid-body decomposition is found using the lowest-energy collective modes of the system
pisqrd.escience-lab.org
PiSQRD | Home
http://pisqrd.escience-lab.org/index.php
Other Bioinformatics Servers hosted by eLab. Leave empty to decompose entire structure in the file). Captured mobility threshold (%). T Aleksiev, R. Potestio, F.Pontiggia, S. Cozzini and C. Micheletti,. PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. Bioinformatics, 2009 vol. 25, num. 20, pag. 2743-2744. Use beta-Gaussian elastic network model. Use the first. Use the 10 lowest energy modes provided in the following file:. For on-line article on Beta-Gaussian model.
PiSQRD | About
http://pisqrd.escience-lab.org/about.php
Welcome to the protein structure quasi-rigid domain decomposition (PiSQRD) web server [1]. The server provides a user-friendly interface to apply the decomposition method introduced and described in ref. [2]. 1] T Aleksiev, R. Potestio, F.Pontiggia, S. Cozzini and C. Micheletti, PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. Bioinformatics, 2009 vol. 25, num. 20, pag. 2743-2744 Click here. In the default operation mode, the input required from the user is minimal:.
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Aladyn | Home
http://aladyn.escience-lab.org/index.php
ALADYN dynamics-based alignment of proteins. Other Bioinformatics Servers hosted by eLab. Please provide entries via file upload or PDB id. The latter can be optionally followed by the chain identifier, e.g. 3hvgA. Of PDB entry 3hvg. To align the HIV-1 protease and human beta-secretase enter 1aid. In the two PDB code fields. ALADYN: a web server for aligning proteins by matching their large-scale motion. R Potestio; T. Aleksiev; F. Pontiggia; S. Cozzini; C. Micheletti.
eLab - Pisqrd
http://e-science.it/index.php/Main/Pisqrd
EXact project reaches final phase at CNR StartCUP 2010. Mercurio cluster on production. Mercurio Cubenet clusters integrated in Cerbero! ELab, in collaboration with Cristian Micheletti and Raffaello Potestio, setup the PiSQRD. Web resource can be used to subdivide protein structures in quasi-rigid dynamical domains. The latter are groups of amino acids behaving as approximately-rigid units in the course of protein equilibrium fluctuations. The PiSQRD. Http:/ pisqrd.escience-lab.org.
eLab - Pisqrd
http://www.escience-lab.org/index.php/Main/Pisqrd
EXact project reaches final phase at CNR StartCUP 2010. Mercurio cluster on production. Mercurio Cubenet clusters integrated in Cerbero! ELab, in collaboration with Cristian Micheletti and Raffaello Potestio, setup the PiSQRD. Web resource can be used to subdivide protein structures in quasi-rigid dynamical domains. The latter are groups of amino acids behaving as approximately-rigid units in the course of protein equilibrium fluctuations. The PiSQRD. Http:/ pisqrd.escience-lab.org.
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PiSQRD | Home
Other Bioinformatics Servers hosted by eLab. Leave empty to decompose entire structure in the file). Captured mobility threshold (%). T Aleksiev, R. Potestio, F.Pontiggia, S. Cozzini and C. Micheletti,. PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. Bioinformatics, 2009 vol. 25, num. 20, pag. 2743-2744. Use beta-Gaussian elastic network model. Use the first. Use the 10 lowest energy modes provided in the following file:. For on-line article on Beta-Gaussian model.
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