Provides an introduction to the ALEXA-Seq portion of the ALEXA website, that is the methods for alternative expression analysis that are based on massively parallely whole transcriptome shotgun sequencing
http://www.alexa-seq-lbl.org/
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ALEXA-Seq: Alternative Expression Analysis by Massively Parallel Sequencing | alexa-seq-lbl.org Reviews
https://alexa-seq-lbl.org
Provides an introduction to the ALEXA-Seq portion of the ALEXA website, that is the methods for alternative expression analysis that are based on massively parallely whole transcriptome shotgun sequencing
Results generated by application of the ALEXA-Seq approach
https://alexa-seq.genome.wustl.edu/alexa_seq/results.htm
The following table summarizes data sets that have completed analysis by the ALEXA-Seq approach. Additional details for these projects are provided below. Additional projects that are in the process of being analyzed are also listed. Further additional projects are being analyzed externally at others centres, such as the LBL. Life Sciences Division who are currently mirroring this site and using ALEXA-Seq to analyze some of their data: alexa-seq-lbl.org. 1 NF1 knockout mice. 6 U2AF1 WT vs MT. Release of ...
ALEXA-Seq: Alternative Expression Analysis by Massively Parallel Sequencing
https://alexa-seq.genome.wustl.edu/alexa_seq/index.htm
A brief introduction to alternative expression analysis by massively parallel RNA sequencing. A brief overview of the methods employed in this analysis. Visualize alternative expression with the ALEXA-Seq data viewer. Get ALEXA-Seq annotation databases for various species, raw data, source code, etc. ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'. Nature Methods. 2010 Oct;7(10):843-847. Pubmed. The BC Cancer Agency.
Results generated by application of the ALEXA-Seq approach
http://www.alexaplatform.org/alexa_seq/results.htm
The following table summarizes data sets that have completed analysis by the ALEXA-Seq approach. Additional details for these projects are provided below. Additional projects that are in the process of being analyzed are also listed. Further additional projects are being analyzed externally at others centres, such as the LBL. Life Sciences Division who are currently mirroring this site and using ALEXA-Seq to analyze some of their data: alexa-seq-lbl.org. Currently, updates are being added to the ' Breast.
ALEXA: Alternative Expression Analysis
http://www.alexaplatform.org/index.htm
Oct 2009: Release of the ALEXA-Seq data viewer. Nov 2009: The first data set analyzed can be viewed here: 5-FU resistance. Apr 2010: ALEXA-Seq analysis is now completed for 16 of 19 data sets representing 155 RNA-Seq libraries. See the results. May 2010: Release of ALEXA-Seq code. June 2010: Our collorators at the LBL are using ALEXA-Seq to analyze some of their data: alexa-seq-lbl.org. Click one of the buttons below to jump straight to alternative expression results or search for a specific gene,. We us...
ALEXA-Seq: Alternative Expression Analysis by Massively Parallel Sequencing
http://www.alexaplatform.org/alexa_seq/index.htm
A brief introduction to alternative expression analysis by massively parallel RNA sequencing. A brief overview of the methods employed in this analysis. Visualize alternative expression in one of 19 data sets with the ALEXA-Seq data viewer. Get ALEXA-Seq annotation databases for eight species, raw data, source code, etc. ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'. Nature Methods. 2010 Oct;7(10):843-847. Pubmed.
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ALEXA-Seq: Alternative Expression Analysis by Massively Parallel Sequencing
May 2010: Alexa-seq goes live at LBL! ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'. Citation: Malachi Griffith, Griffith OL, Morin RD, Tang MJ, Hou Y, Pugh TJ, Ally A, Asano JK, Chan SY, Li I, McDonald H, Teague K, Zhao Y, Zeng T, Delaney A, Hirst M, Morin GB, Jones SJM, Tai IT, Marco A. Marra. Alternative expression analysis by RNA sequencing. We recommend starting at the Intro.
ALEXA-seq: Alternative Expression Analysis by RNA sequencing
Aug 2011: ALEXA-seq goes live at The Genome Institute (WashU). Click one of the buttons below to jump straight to alternative expression results or search for a specific gene,. This is the Washington University School of Medicine instance on ALEXA-seq. To see the original ALEXA-seq instance go to the BCGSC ALEXA-seq. Page Some of the links throughout this page (downloads, acknowledgements, etc.) will direct you there as well. This work was initiated at the Genome Sciences Centre.
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