An offshoot of the Genome 10K project, and primarily organized by the UC Davis Genome Center, Assemblathons are contests to assess state-of-the-art methods in the field of genome assembly....
http://www.assemblathon.org/
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The Assemblathon | assemblathon.org Reviews
https://assemblathon.org
An offshoot of the Genome 10K project, and primarily organized by the UC Davis Genome Center, Assemblathons are contests to assess state-of-the-art methods in the field of genome assembly....
assemblathon.org
The Assemblathon • The Assemblathon 2 paper has been published!
http://assemblathon.org/post/56126786649/the-assemblathon-2-paper-has-been-published
The Assemblathon 2 paper has been published! Image from http:/ flickr.com/photos/jayneandd/. It has taken a lot of work (and time) but I’m happy to announce that the Assemblathon 2 paper has today been published in GigaScience. This final version of the manuscript contains several minor corrections compared to the last pre-print that was submitted to arXiv.org. And are citable with DOIs for each dataset as follows:. DOI 10.5524/100060 Assemblathon 2 assemblies. I’ll post again later this week with ...
The Assemblathon • Background
http://assemblathon.org/background
What is the Assemblathon? The Assemblathon is a set of periodic collaborative efforts that all help improve methods of genome assembly. It will hopefully become an annual event that will spur improvements in this computationally intensive field. The overall goal of each Assemblathon event is to have participating groups try to use their own software to each assemble one or more genomes that the organizers of the Assemblathon will make available (see the rules page. And were published in Genome Research.
The Assemblathon: Archive
http://assemblathon.org/archive
Filter by post type. Announcing the Assemblathon 'publish for free' contest. The Assemblathon 2 paper. Won the 2013 BioMed Central Research Award for Open Data. Typically these Research Awards are presented to individual scientists and winners receive a small cash prize in recognition for their efforts. Given that there are almost 100 authors on the Assemblathon 2 paper, it didn’t seem practical to split up any prize money. BMC) will grant two. APC waivers that can be applied to any BMC journal. The firs...
The Assemblathon
http://assemblathon.org/mobile
Announcing the Assemblathon ‘publish for free’ contest. The Assemblathon 2 paper. Won the 2013 BioMed Central Research Award for Open Data. Typically these Research Awards are presented to individual scientists and winners receive a small cash prize in recognition for their efforts. Given that there are almost 100 authors on the Assemblathon 2 paper, it didn’t seem practical to split up any prize money. BMC) will grant two. APC waivers that can be applied to any BMC journal. The first round of this conte...
The Assemblathon • Mailing lists
http://assemblathon.org/mailing-lists
There is one main mailing list for discussion of the Assemblathon. This is. Intended for use by participants of ongoing. Assemblathon contests, but the list is open to anyone interested in genome assembly. Assemblathon contest, t his list typically generates between 20–100 emails per month. Otherwise there is almost no traffic. A searchable. Of this list is available. If you are interested in subscribing please follow these instructions:. Using your desired email address. Leave the message body blank.
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Richard Casey | Richard Casey
https://rmcsoftwareinc.wordpress.com/author/rmcsoftwareinc
Software Project Manager – HPC/Bioinformatics. This Blog is Moving! Posted by Richard Casey. Asymp; Leave a comment. For those of you who are subscribed to and following my blogsite, it is moving to a new website effective immediately. The new website is:. For continuity, all of my previous blogs have been migrated to the new site. And I will post all new blogs to the site as well. I hope you join me there! Genome Assembly without the RAM. Posted by Richard Casey. Asymp; 3 Comments. As an alternative to ...
Genome Assembly without the RAM | Richard Casey
https://rmcsoftwareinc.wordpress.com/2015/02/04/genome-assembly-without-the-ram
Software Project Manager – HPC/Bioinformatics. Genome Assembly without the RAM. Posted by Richard Casey. Asymp; 3 Comments. De novo assembly of Next Generation Sequencing (NGS). Assembling genomes with little memory. Is the construction of genomes without reference to existing known genomes. There is a wide variety of de novo assembly tools. From experience we know that some assemblers require several hundred GB (gigabytes) up to 1 TB (terabyte) of RAM,. Minia source code is available here. And the NCBI ...
GAGE
http://gage.cbcb.umd.edu//index.html
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been published in the journal. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Why do we need GAGE? How much sequencing coverage do I need for my genome project? Here are some differences:. We will c...
bioMCMC: Testing for common ancestry
http://biomcmc.blogspot.com/2012/05/testing-for-common-ancestry.html
Rambling notes on Bayesian Procedures in Biology. Tuesday, May 15, 2012. Testing for common ancestry. Our commentary on Douglas Theobald's test from Universal Common Ancestry (UCA) just went online. The original idea was to make a user-friendly review of his analysis described in " A formal test of the theory of universal common ancestry. Using a curated set of genes highly conserved among all three domains, his test indicated that UCA is a much better explanation than IO, and that each gene is better re...
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Assemblasolo - Assemblaggi metallici
Assemblasolo è presente da oltre 40 anni con professionalità e grande esperienza nel settore della lavorazione della lamiera e della carpenteria medio leggera. Offrire un servizio completo nella lavorazione della meccanica e produzione di prodotti finiti, per soddisfare le molteplici esigenze del cliente. Manufatti finiti in metallo su ordine del cliente, lampade della tradizione IL LAMPIONE DI ASOLO , fioriere e complementi di arredo. Assemblasolo è stata premiata come [.].
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The assembling of curious art in the form of 2- and 3-dimensional collage. Most of my ideas stem from my dreams. Whether it be in the form of a three-dimensional shrine or a 2-D digital collage, these unwritten scripts come-to-life in my waking hours. They are often enhanced and modified by surroundings, people or situations that have influenced me in some way. Please inquire via email: assemblasylum@gmail.com. You may also visit my graphic design site: shellywells.com.
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The Assemblathon
Announcing the Assemblathon ‘publish for free’ contest. The Assemblathon 2 paper. Won the 2013 BioMed Central Research Award for Open Data. Typically these Research Awards are presented to individual scientists and winners receive a small cash prize in recognition for their efforts. Given that there are almost 100 authors on the Assemblathon 2 paper, it didn’t seem practical to split up any prize money. BMC) will grant two. APC waivers that can be applied to any BMC journal. The first round of this conte...
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DefaultsMenu.assemblies} public boards. Project.getProducts().length } product{ project.getProducts().length = = 1? S' } { project.rooms.length } { project.rooms.length = = 1? Roomproducts.length } product{ room.products.length = = 1? CurrentUser.fullName : authentication.userName}.
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