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Rambling notes on <a href="http://www.biomcmc.org/">Bayesian Procedures in Biology</a>

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bioMCMC | biomcmc.blogspot.com Reviews
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Rambling notes on &lt;a href=&quot;http://www.biomcmc.org/&quot;&gt;Bayesian Procedures in Biology&lt;/a&gt;
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bioMCMC | biomcmc.blogspot.com Reviews

https://biomcmc.blogspot.com

Rambling notes on &lt;a href=&quot;http://www.biomcmc.org/&quot;&gt;Bayesian Procedures in Biology&lt;/a&gt;

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1

bioMCMC: Postdoctoral positions to work with Phylogenomics in Vigo

http://biomcmc.blogspot.com/2012/06/postdoctoral-positions-available-to.html

Rambling notes on Bayesian Procedures in Biology. Friday, June 15, 2012. Postdoctoral positions to work with Phylogenomics in Vigo. There are two postdoc positions available in our lab - the Phylogenomics group of the University of Vigo, in Spain. You can read the announcement in evoldir. EURAXESS - Postdoctoral positions in Phylogenomics - University of Vigo, Spain. Initial appointments will be made for one year, with possible extension. Gross annual salary including benefits will be around 24-30 kE...

2

bioMCMC: Distribution of recombination distances between trees - poster at SMBE2010

http://biomcmc.blogspot.com/2011/07/distribution-of-recombination-distances.html

Rambling notes on Bayesian Procedures in Biology. Saturday, July 23, 2011. Distribution of recombination distances between trees - poster at SMBE2010. Post exported from my old blog, now defunct - published originally on July 12, 2010. I just came back from SMBE2010. Where I presented a poster about our recombination detection software. And had the chance to see awesome research other people are doing. The poster can be downloaded here (1.MB in pdf format). In our case we devised an approximation to this...

3

bioMCMC: A "parsimonious" Bayesian supertree model for estimating species trees

http://biomcmc.blogspot.com/2014/10/a-parsimonious-bayesian-supertree-model.html

Rambling notes on Bayesian Procedures in Biology. Friday, October 10, 2014. A "parsimonious" Bayesian supertree model for estimating species trees. We just published such an alternative. The distance supertree model is based on several distance measures d(G,S) between each gene family tree G and the species tree S. A species trees that is more similar to all gene trees is more likely than a more distant one. Notice that d(G,S) can in fact be a vector with several distances. Can reduce the uncertainty of ...

4

bioMCMC: About

http://biomcmc.blogspot.com/p/about.html

Rambling notes on Bayesian Procedures in Biology. I have also a supersized microblog, with my daily rants. That don’t fit inside a tweet. On this blog I write material related to my work, but it’s still my personal space. My employers have no responsibility over what I write here, and the mistakes you find are all mine. If you still haven’t done so, please read our policy for comments. Before joining the discussion. You can follow new messages through the RSS feed. See " subscribe to. History of this blog.

5

bioMCMC: The difference between the RF and the NNI distance

http://biomcmc.blogspot.com/2013/02/the-difference-between-rf-and-nni.html

Rambling notes on Bayesian Procedures in Biology. Friday, February 8, 2013. The difference between the RF and the NNI distance. Just to complement my answer to a blog post. Where I maintain that the Nearest-Neighbor Interchange (NNI) distance is not equivalent to the Robinson-Foulds (RF) distance, a simple example:. The RF distance is the number of edges (=branches) that are unique to each tree (that's why it's also called the symmetric difference. The NNI distance between T1 and T2 is 6, one more than t...

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Um minuto de Ciência: Bolsas de doutorado da Fullbright nos Estados Unidos

http://minutodeciencia.blogspot.com/2011/02/bolsas-de-doutorado-da-fullbright-nos.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Quarta-feira, 16 de fevereiro de 2011. Bolsas de doutorado da Fullbright nos Estados Unidos. Ficamos sabendo que até o dia 30 de abril, formados e formandos podem se inscrever na Comissão Fulbright. Para quem quiser saber mais sobre doutorados nos EUA - inclusive outras formas de financiamento, já que o Fullbright é bem restrito - eu sugiro os seguintes posts do Ars Physica. Estão sob a licen...

minutodeciencia.blogspot.com minutodeciencia.blogspot.com

Um minuto de Ciência: Novembro 2011

http://minutodeciencia.blogspot.com/2011_11_01_archive.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Sexta-feira, 25 de novembro de 2011. Formação de um sincelo marinho na Antártica. O vídeo está acelerado, na verdade esse fenômeno durou umas seis horas. A salmoura, mais pesada e fria que a água do mar, cai até o fundo do oceano, onde congela tudo o que encontra. BBC Nature - 'Brinicle' ice finger of death filmed in Antarctic. Escrito por Leonardo de Oliveira Martins. Creative Commons Attrib...

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Um minuto de Ciência: Soluções inovadoras: geoengenharia

http://minutodeciencia.blogspot.com/2010/12/solucoes-inovadoras-geoengenharia.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Sexta-feira, 3 de dezembro de 2010. Semana passada o jornal O Estado de São Paulo. Há também um infográfico descrevendo as várias propostas. Com prós e contras de cada método. Você pode fazer o download das reportagens e do infográfico aqui (em formato pdf). Projetos de geoengenharia voltam a ser cogitados para coibir aquecimento global. Moratória para pesquisa é polêmica. Os trabalhos de Leo...

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Um minuto de Ciência: Fevereiro 2011

http://minutodeciencia.blogspot.com/2011_02_01_archive.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Quarta-feira, 16 de fevereiro de 2011. Bolsas de doutorado da Fullbright nos Estados Unidos. Ficamos sabendo que até o dia 30 de abril, formados e formandos podem se inscrever na Comissão Fulbright. Para quem quiser saber mais sobre doutorados nos EUA - inclusive outras formas de financiamento, já que o Fullbright é bem restrito - eu sugiro os seguintes posts do Ars Physica. Este blog não est...

minutodeciencia.blogspot.com minutodeciencia.blogspot.com

Um minuto de Ciência: Janeiro 2011

http://minutodeciencia.blogspot.com/2011_01_01_archive.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Sábado, 29 de janeiro de 2011. Momento em que o parasita da malária invade uma célula. No site da New Scientist. Plasmodium invadindo hemácia (via New Scientist. Notícia e crédito da imagem. Cell Host and Microbe, Volume 9, Issue 1, doi:10.1016/j.chom.2010.12.003. Escrito por Leonardo de Oliveira Martins. Compartilhar com o Pinterest. Os trabalhos de Leonardo de Oliveira Martins.

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biomc2 - bioMCMC - Bayesian Procedures in Biology

https://sites.google.com/site/biomcmc/software/biomc2

Bayesian Procedures in Biology. Bayesian Procedures in Biology. New article describing the "penalty function". Poster live at F1000 Poster Bank. Poster presented at SMBE2010 available for download. The file server is down. Version 1.9 available. The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a. Creative Commons Attribution-Share Alike 3.0 Unported License. The softwares should be licensed under the GNU General Public License. Any more on google code.

blog.leomartins.org blog.leomartins.org

Bioinformatics News and Reviews: The difference between the RF and the NNI distances

http://blog.leomartins.org/2013/02/the-difference-between-rf-and-nni.html

Bioinformatics News and Reviews. By any other name. The personal blog of Leonardo de Oliveira Martins. Quod gratis asseritur, gratis negatur". Thursday, February 7, 2013. The difference between the RF and the NNI distances. Just to complement my answer to a blog post. Where I maintain that the Nearest-Neighbor Interchange (NNI) distance is not equivalent to the Robinson-Foulds (RF) distance, a simple example:. And it may be normalized to one. If we highlight the unique edges on trees T1 and T2. The NNI d...

minutodeciencia.blogspot.com minutodeciencia.blogspot.com

Um minuto de Ciência: Novidades da semana

http://minutodeciencia.blogspot.com/2010/09/novidades-da-semana.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Sexta-feira, 3 de setembro de 2010. Trechos de reportagens de jornais, comentando algumas novas pesquisas. Nova droga elimina resistência do parasita causador da malária (Folha, 03/09/2010). Descoberto novo tipo de composto para o combate da malária (Estadão, 01/09/2010). O estudo foi feito por meio de uma triagem, por meio de testes em células, de milhares de produtos naturais registrados na...

minutodeciencia.blogspot.com minutodeciencia.blogspot.com

Um minuto de Ciência: Pela erradicação da poliomielite

http://minutodeciencia.blogspot.com/2012/03/pela-erradicacao-da-poliomielite.html

Um minuto de Ciência. Notícias curtas de divulgação científica: avanços, retrocessos e uma paradinha para o café. Quarta-feira, 28 de março de 2012. Pela erradicação da poliomielite. Pela erradicação desta foto — Instituto Ciência Hoje. Escrito por Leonardo de Oliveira Martins. Compartilhar com o Pinterest. Eu costumo aceitar todos os comentários que não sejam SPAM e que não sejam ofensivos. Mas antes de escrever, leia a política de comentário do blog. Caso ele não siga as regras do blog. Creative Common...

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Alternative Ways to Get Your Excercise. September 13, 2016. So we have been receiving a lot of questions in regards to alternative types of exercise and I thought it would be a great idea to tackle that question. When people think of “exercise” most people think of running on a treadmill, or using a stationary bike, or maybe going to the local gym and hopping on one of those random machines and working out random body parts. Lol. Yes, those are forms of exercise, but they are BORING. Hunting big game lik...

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Rambling notes on Bayesian Procedures in Biology. Wednesday, November 30, 2016. Comparative methods in the genomic era. From doi:10.1063/1.4886855. Here I include a few links to good comments and papers discussing comparative methods, starting with Felsenstein's reaction to the paper above (which is about airplanes, by the way). I also include at the bottom the slides of an impromptu. Physicists and engineers decide how to analyze evolution (by Joe Felsenstein). But permit me a curmudgeonly point: This p...

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bioMCMC - Bayesian Procedures in Biology

Bayesian Procedures in Biology. Bayesian Procedures in Biology. New article describing the "penalty function". Poster live at F1000 Poster Bank. Poster presented at SMBE2010 available for download. The file server is down. Version 1.9 available. The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a. Creative Commons Attribution-Share Alike 3.0 Unported License. The softwares should be licensed under the GNU General Public License.

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BioMCMC | Bayesian procedures in Biology

Bayesian procedures in Biology. This blog is being put to sleep. July 23, 2011. Leonardo de Oliveira Martins. I realized that I have too many blogs, too little time. Since I didn’t quite get the grip of wordpress (I cannot customize the way I want, I don’t have full control about the final formatting, I cannot add gadgets, etc.) I decided to merge this site with his homonymous at blogspot. I planned to use the blogspot version just for my software, but I was not updating it at all. March 18, 2011. Oh, an...

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