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Bioinformatics News and Reviews

by any other name. The personal blog of <a href="http://www.leomartins.org">Leonardo de Oliveira Martins</a>. <i>"quod gratis asseritur, gratis negatur"</i>

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Bioinformatics News and Reviews | blog.leomartins.org Reviews

https://blog.leomartins.org

by any other name. The personal blog of &lt;a href=&quot;http://www.leomartins.org&quot;&gt;Leonardo de Oliveira Martins&lt;/a&gt;. &lt;i&gt;&quot;quod gratis asseritur, gratis negatur&quot;&lt;/i&gt;

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1

Bioinformatics News and Reviews: eLife pursuing the niche of exclusiveness

http://blog.leomartins.org/2012/05/e-life-pursuing-niche-of-exclusiveness.html

Bioinformatics News and Reviews. By any other name. The personal blog of Leonardo de Oliveira Martins. Quod gratis asseritur, gratis negatur". Friday, May 18, 2012. ELife pursuing the niche of exclusiveness. Which I don't blame them really, they are better positioned than others to explore the limelight publications. I just read this FAQ about it. Helping your findings achieve maximum reach and impact. In that they are really into potential impact. My comments on twitter:. And peer reviewers are not that...

2

Bioinformatics News and Reviews: When companies do it, shame on them. When politicians do it, that's the future.

http://blog.leomartins.org/2013/08/when-companies-do-it-shame-on-them-when.html

Bioinformatics News and Reviews. By any other name. The personal blog of Leonardo de Oliveira Martins. Quod gratis asseritur, gratis negatur". Saturday, August 17, 2013. When companies do it, shame on them. When politicians do it, thats the future. The Next Frontier of Consumer Exploitation By Corporations. So what if Google knows where I'm planning my next vacation and suggests hotels for me? Sure, it's creepy, but is there really any harm in companies tracking my info to target ads to me? If the code i...

3

Bioinformatics News and Reviews: And it is a kind of good deed to say well; And yet, words are no deeds.

http://blog.leomartins.org/2013/12/and-it-is-kind-of-good-deed-to-say-well.html

Bioinformatics News and Reviews. By any other name. The personal blog of Leonardo de Oliveira Martins. Quod gratis asseritur, gratis negatur". Tuesday, December 10, 2013. And it is a kind of good deed to say well; And yet, words are no deeds. After this year's Nobel prize winner and  editor of glam mag eLife. Randy Schekman announces a boycott to (other) glam magazines. What is wrong with scientific publishing and how to fix it. : gg. I think you might be a hypocrite opiniomics. Of the post, what I was t...

4

Bioinformatics News and Reviews: Do violent video games lead to real violence?

http://blog.leomartins.org/2013/08/do-violent-video-games-lead-to-real.html

Bioinformatics News and Reviews. By any other name. The personal blog of Leonardo de Oliveira Martins. Quod gratis asseritur, gratis negatur". Tuesday, August 13, 2013. Do violent video games lead to real violence? I have the impression that playing a (violent) video game has similar effects on real life as reading a violent book (or even the bible), a comics or watching a movie. After a tragedy in Brazil. Many people were quick to blame violent games (I was reminded of this. It’s important to thin...

5

Bioinformatics News and Reviews: The difference between the RF and the NNI distances

http://blog.leomartins.org/2013/02/the-difference-between-rf-and-nni.html

Bioinformatics News and Reviews. By any other name. The personal blog of Leonardo de Oliveira Martins. Quod gratis asseritur, gratis negatur". Thursday, February 7, 2013. The difference between the RF and the NNI distances. Just to complement my answer to a blog post. Where I maintain that the Nearest-Neighbor Interchange (NNI) distance is not equivalent to the Robinson-Foulds (RF) distance, a simple example:. And it may be normalized to one. If we highlight the unique edges on trees T1 and T2. The NNI d...

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bioMCMC: How to summarise a collection of trees that came from a Bayesian analysis

http://biomcmc.blogspot.com/2011/07/how-to-summarise-collection-of-trees.html

Rambling notes on Bayesian Procedures in Biology. Sunday, July 24, 2011. How to summarise a collection of trees that came from a Bayesian analysis. But let's fix on those by now. We might not be aware of it, but when we choose for one or another summary we are in fact deciding for the tree estimate that minimizes its distance to all other trees in the set, and in expectation this will be the closest to the true tree under this distance. Is the one that originated the data). To be more explicit, the c...

biomcmc.blogspot.com biomcmc.blogspot.com

bioMCMC: The specialization of novel genes

http://biomcmc.blogspot.com/2011/07/specialization-of-novel-genes.html

Rambling notes on Bayesian Procedures in Biology. Saturday, July 23, 2011. The specialization of novel genes. Post exported from my old blog, now defunct - published originally on April 27, 2010. About the software MANTiS. Called my attention, and I've been trying to write about it for a while. This announcement at the EvolDir list. The main result of the paper, published in Genome Biology and Evolution. They worked with gene families identified by MANTiS. Which, as I understand, employs an extension of ...

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Live Stream - Leonardo de Oliveira Martins

http://www.leomartins.org/live-stream

Leonardo de Oliveira Martins. The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell, you are free to share, copy and modify his works - including for commercial purposes - as long as you accredit him where credit is due and any derived works preserve this license. The gadget spec URL could not be found.

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Calendar - Leonardo de Oliveira Martins

http://www.leomartins.org/calendar

Leonardo de Oliveira Martins. The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell, you are free to share, copy and modify his works - including for commercial purposes - as long as you accredit him where credit is due and any derived works preserve this license. Schedule (only public events).

leomartins.org leomartins.org

Academic Transcripts - Leonardo de Oliveira Martins

http://www.leomartins.org/cvitae/transcript

Leonardo de Oliveira Martins. The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell, you are free to share, copy and modify his works - including for commercial purposes - as long as you accredit him where credit is due and any derived works preserve this license. Experimental Course of Molecular Sciences. Courses specific to Molecular Science students) :. One credit is equival...

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Presentations - Leonardo de Oliveira Martins

http://www.leomartins.org/cvitae/conferences

Leonardo de Oliveira Martins. The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell, you are free to share, copy and modify his works - including for commercial purposes - as long as you accredit him where credit is due and any derived works preserve this license. Comprehensive simulation of gene, locus and species trees at the genome-wide level. [poster]. Leonardo de Oliveira ...

biomcmc.blogspot.com biomcmc.blogspot.com

bioMCMC: About

http://biomcmc.blogspot.com/p/about.html

Rambling notes on Bayesian Procedures in Biology. I have also a supersized microblog, with my daily rants. That don’t fit inside a tweet. On this blog I write material related to my work, but it’s still my personal space. My employers have no responsibility over what I write here, and the mistakes you find are all mine. If you still haven’t done so, please read our policy for comments. Before joining the discussion. You can follow new messages through the RSS feed. See " subscribe to. History of this blog.

biomcmc.wordpress.com biomcmc.wordpress.com

Distribution of recombination distances between trees – poster at SMBE2010 | BioMCMC

https://biomcmc.wordpress.com/2010/07/12/distribution-of-recombination-distances-between-trees-poster-at-smbe2010

Bayesian procedures in Biology. New experimental and theoretical approaches towards the understanding of the emergence of viral infections. Facts are there to be used, not regurgitated →. Distribution of recombination distances between trees – poster at SMBE2010. July 12, 2010. Leonardo de Oliveira Martins. I just came back from SMBE2010. Where I presented a poster about our recombination detection software. And I’m distributing it under the Creative Commons License. In our case we devised an approximati...

biomcmc.blogspot.com biomcmc.blogspot.com

bioMCMC: Testing for common ancestry

http://biomcmc.blogspot.com/2012/05/testing-for-common-ancestry.html

Rambling notes on Bayesian Procedures in Biology. Tuesday, May 15, 2012. Testing for common ancestry. Our commentary on Douglas Theobald's test from Universal Common Ancestry (UCA) just went online. The original idea was to make a user-friendly review of his analysis described in " A formal test of the theory of universal common ancestry. Using a curated set of genes highly conserved among all three domains, his test indicated that UCA is a much better explanation than IO, and that each gene is better re...

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