Bgee allows to automatically compare gene expression patterns between species, by referencing expression data on anatomical ontologies, and designing homology relationships between them.
http://bgee.unil.ch/
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Welcome on Bgee: a dataBase for Gene Expression Evolution | bgee.unil.ch Reviews
https://bgee.unil.ch
Bgee allows to automatically compare gene expression patterns between species, by referencing expression data on anatomical ontologies, and designing homology relationships between them.
New taxon Dipnotetrapodomorpha in NCBI taxonomy | bgeedb
https://bgeedb.wordpress.com/2013/05/29/new-taxon-dipnotetrapodomorpha-in-ncbi-taxonomy
Expressed, or not expressed? That is the question! Rolling out Bgee 13, from 5 to 17 species with gene expression calls →. New taxon Dipnotetrapodomorpha in NCBI taxonomy. May 29, 2013. For the annotation of homologies in Bgee, we are presently curating in Uberon. The taxonomic level at which each homologous relation is correct. For example,. Is homologous accross Metazoa, while. Is only homologous among Mammalia. For this, we use NCBI taxonomy IDs. We thus wrote the following email to NCBI:. The standar...
bgeedb | Gene Expression Evolution | Page 2
https://bgeedb.wordpress.com/page/2
Newer posts →. TopAnat: GO-like enrichment of anatomical terms mapped to genes by expression patterns. November 24, 2015. Update: This was the first blogpost on TopAnat. There are now quite a few more, under the tag TopAnat. We are glad to roll out the first public beta version of our new tool, TopAnat:. TopAnat uses the classical GO-enrichment approach (specifically, from TopGO. The ontology used described anatomy rather than gene function;. Weigth (update: now by default). Loading can be a bit slow):.
N S Lab Useful links
http://pauling.mbu.iisc.ac.in/links.html
Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...
N S Lab Useful links
http://nslab.mbu.iisc.ernet.in/links.html
Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...
dbxref.txt
http://www.uniprot.org/docs/dbxref
Xd; p An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. /p p a href="/manual/evidences" More /a /p. Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. Protein sets from fully sequenced genomes. Systems used to automatically annotate proteins with high accuracy:. UniRule (Expertly curated rules). SAAS (System generated rules). Cat :...
Project Listing | NCBO BioPortal
http://bioportal.bioontology.org/projects
Browse a selection of projects that use BioPortal resources. A Visualization Tool for Refining Mappings between Biomedical Ontologies. Ontology alignment, the task of identifying mappings between ontologies, is a key task for knowledge sharing between applications that use. Watson W.K. Chua, Jung-jae Kim, Bui Duc Hieu. Access of OntoKBCF via a CCR-based EHR prototype. This is an exploration of introducing molecular genetic information into a simulated clinical setting- a Continuity of Care Record (CCR).
ScanProsite
http://prosite.expasy.org/scanprosite
This form allows you to scan proteins for matches against the PROSITE collection of motifs. As well as against your own patterns. Option 1 - Submit PROTEIN sequences to scan them against the PROSITE collection of motifs. Option 2 - Submit MOTIFS to scan them against a PROTEIN sequence database. Option 3 - Submit PROTEIN sequences and MOTIFS to scan them against each other. STEP 1 - Submit PROTEIN sequences. Submit PROTEIN sequences (max. 10). Accessions e.g. P98073. Or identifiers e.g. ENTK HUMAN. Number...
Contact Us
http://www.camp.bicnirrh.res.in/scanprosite.php
This form allows you to scan proteins for matches against the PROSITE collection of motifs. As well as against your own patterns. Option 1 - Submit PROTEIN sequences to scan them against the PROSITE collection of motifs. Option 2 - Submit MOTIFS to scan them against a PROTEIN sequence database. Option 3 - Submit PROTEIN sequences and MOTIFS to scan them against each other. STEP 1 - Submit PROTEIN sequences. Submit PROTEIN sequences (max. 10). Accessions e.g. P98073. Or identifiers e.g. ENTK HUMAN. Number...
2015-05-25 release
http://uberon.github.io/release/2015/05/25/release.html
Multiple improvements to multiple systems, highlights including enteropneust subdivisions and representation of trigeminal placodes. This release incorporates a first pass at organism subdivisions for the acorn worm (enteropneust). We would like to bud this off into an external ontology that is federated with the core Uberon. For more information, see 692. We also clarified the distinctinction between trigeminal and profundal placodes and the structures they give rise to. For more information, see 693.
2015-08-11 release
http://uberon.github.io/release/2015/08/11/release.html
Axiomatized spinal plexuses and ganglia using innervates relationships. Brought in select synonyms from ZFA. Aligned with FMA 4.0.1 - this version of FMA has many more embryonic structures. Generalized classes from EHDAA2: embryonic capillary plexus, yolk sac cavities. NT: submandibular region. Issue 1137. Added logical definition for endothelium. IRI: http:/ purl.obolibrary.org/obo/uberon.owl. VersionIRI: http:/ purl.obolibrary.org/obo/uberon/releases/2015-07-24/uberon.owl. New Class : deep facial vein.
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Welcome to Bgee: a dataBase for Gene Expression Evolution
TopAnat: Expression enrichment analysis. How to access Bgee data. TopAnat: Expression enrichment analysis. Gene expression data in animals. Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix,. Hybridization, and EST data). Species with data in Bgee (click on species to see more details). See RNA-Seq and Affymetrix data. See gene expression calls. News (features are being added incrementally). Addition of c...
Welcome on Bgee: a dataBase for Gene Expression Evolution
Bgee: Gene Expression Evolution. Welcome on the latest release of Bgee, Bgee release 13. Features are being added incrementally:. 2015-04-16: release of the multi-species differential expression data (across anatomy) for 6 groups, see download page. 2015-03-03: release of the single-species differential expression data for 11 species, see download page. 2014-12-19: release of the single-species expression data for 17 species, see download page. You can follow us on twitter. Back to the Top.
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bgeedb | Gene Expression Evolution
New gene page, new Bgee interface. March 11, 2016. Yesterday we have released a major update of our web interface:. The download functionality remains the same, as does the data (processing for the next release is just starting with the new Ensembl release. We love Ensembl). It’s just easier to find and use (we hope! Feedback welcome at bgee@sib.swiss. We also rolled out some improvements in TopAnat. Clearer access to documentation;. Clearer access to example datasets;. Presented above, is expressed in 6...
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Energy Efficiency and Renewable Sources Fund. For Clients / Procedures. Documents and Application Forms. National Academy of Music Prof.P.Vladigerov Sofia. Mityo Stanev Primary School, the town of Stara Zagora. Agricultural University Rectorate, Plovdiv. StSt Kiril and Metodii Veliko Tyrnovo University, block 11. Veliko Tyrnovo University St.St.Kiril and Metodii, block 7. Vitosha Factory, wool corps in the town of Sofia. Building of “Vitosha Factory Wool Corps” in the. Summer Theather, Burgas Municipality.
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