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bgeedb | Gene Expression Evolution

Gene Expression Evolution

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bgeedb | Gene Expression Evolution | bgeedb.wordpress.com Reviews

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Gene Expression Evolution

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1

Rolling out Bgee 13, from 5 to 17 species with gene expression calls | bgeedb

https://bgeedb.wordpress.com/2014/12/19/rolling-out-bgee-13-from-5-to-17-species-with-gene-expression-calls

New taxon Dipnotetrapodomorpha in NCBI taxonomy. 10 million calls of differential gene expression for 11 species, from #RNAseq and #microarray →. Rolling out Bgee 13, from 5 to 17 species with gene expression calls. December 19, 2014. We are proud to be rolling out the new and improved Bgee over the next weeks! Welcome to release 13. In the 2 years since our last release, we have transferred all our annotations to the bilaterian ontology Uberon. Developmental stage modeling collaboration on Github. For P...

2

Wait! That’s actually the same data… | bgeedb

https://bgeedb.wordpress.com/2012/08/28/wait-thats-actually-the-same-data

New release of Bgee: extra clean transcriptome data. Expressed, or not expressed? That is the question! That’s actually the same data. August 28, 2012. GEO) you identify four different experiments ( GSE13904. If this redundancy of samples is not explicitly stated on GEO, how did we come to notice it? Well, sometimes the redundancy is evident. The sample ID and the name of the data files are identical between experiments. For example it’s clear that sample GSM2334. Belongs to experiments GSE75. This promp...

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bgeedb | bgeedb

https://bgeedb.wordpress.com/author/bgeedb

This is the blog of the database of gene expression evolution Bgee, at University of Lausanne and Swiss Institute of Bioinformatics. http:/ www.bgee.org/. New gene page, new Bgee interface. March 11, 2016. Yesterday we have released a major update of our web interface: The download functionality remains the same, as does the data (processing for the next release is just starting with the new Ensembl release we love Ensembl). It’s just easier … Continue reading →. March 7, 2016. March 2, 2016. In a recent...

4

New taxon Dipnotetrapodomorpha in NCBI taxonomy | bgeedb

https://bgeedb.wordpress.com/2013/05/29/new-taxon-dipnotetrapodomorpha-in-ncbi-taxonomy

Expressed, or not expressed? That is the question! Rolling out Bgee 13, from 5 to 17 species with gene expression calls →. New taxon Dipnotetrapodomorpha in NCBI taxonomy. May 29, 2013. For the annotation of homologies in Bgee, we are presently curating in Uberon. The taxonomic level at which each homologous relation is correct. For example,. Is homologous accross Metazoa, while. Is only homologous among Mammalia. For this, we use NCBI taxonomy IDs. We thus wrote the following email to NCBI:. The standar...

5

bgeedb | Gene Expression Evolution | Page 2

https://bgeedb.wordpress.com/page/2

Newer posts →. TopAnat: GO-like enrichment of anatomical terms mapped to genes by expression patterns. November 24, 2015. Update: This was the first blogpost on TopAnat. There are now quite a few more, under the tag TopAnat. We are glad to roll out the first public beta version of our new tool, TopAnat:. TopAnat uses the classical GO-enrichment approach (specifically, from TopGO. The ontology used described anatomy rather than gene function;. Weigth (update: now by default). Loading can be a bit slow):.

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TopAnat: Expression enrichment analysis. How to access Bgee data. TopAnat: Expression enrichment analysis. Gene expression data in animals. Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix,. Hybridization, and EST data). Species with data in Bgee (click on species to see more details). See RNA-Seq and Affymetrix data. See gene expression calls. News (features are being added incrementally). Addition of c...

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bgeedb | Gene Expression Evolution

New gene page, new Bgee interface. March 11, 2016. Yesterday we have released a major update of our web interface:. The download functionality remains the same, as does the data (processing for the next release is just starting with the new Ensembl release. We love Ensembl). It’s just easier to find and use (we hope! Feedback welcome at bgee@sib.swiss. We also rolled out some improvements in TopAnat. Clearer access to documentation;. Clearer access to example datasets;. Presented above, is expressed in 6...

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