frank-fbergmann.blogspot.com
Frank Bergmann: April 2013
http://frank-fbergmann.blogspot.com/2013_04_01_archive.html
Saturday, April 27, 2013. Ninja to the rescue. Don't you hate all these long compile times? I've head of Ninja. A long time ago, but never gave it much thought. In case you don't feel like following the page, Ninja is a replacement for make / nmake. So today I gave it a try:. Couldn't be simpler. I cloned the git repository, opened a VS command line, called bootstrap.py with python 2.7, and added the directory to the path. And the build is ready to go. To collect timing information, i run using time:.
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/download_action
Browse Metabolites and Reactions. Metab Eng. 2008 Jan;10(1):55-68. 13C-metabolic flux analysis of Actinobacillus succinogenes fermentative metabolism at different NaHCO3 and H2 concentrations. McKinlay JB, Vieille C. Metab Eng. 2007 Mar;9(2):177-92. Determining Actinobacillus succinogenes metabolic pathways and fluxes by NMR and GC-MS analyses of 13C-labeled metabolic product isotopomers. McKinlay JB, Shachar-Hill Y, Zeikus JG, et al. Click here to see download links. Click here to see download links.
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/index_action
Browse Metabolites and Reactions. Metab Eng. 2008 Jan;10(1):55-68. 13C-metabolic flux analysis of Actinobacillus succinogenes fermentative metabolism at different NaHCO3 and H2 concentrations. McKinlay JB, Vieille C. Metab Eng. 2007 Mar;9(2):177-92. Determining Actinobacillus succinogenes metabolic pathways and fluxes by NMR and GC-MS analyses of 13C-labeled metabolic product isotopomers. McKinlay JB, Shachar-Hill Y, Zeikus JG, et al. J Biotechnol. 2013 Dec;168(4):355-61. Metabolic flux analysis ...J Bio...
kimosys.org
KiMoSys: a web-based repository of experimental data for Kinetic Models of biological Systems
http://www.kimosys.org/links
Related External LINKS TO. Modeling tool for biochemical networks. Mathematical modeling of dynamical systems. Parameter estimation tool for SBML based models. Systems Biology toolbox for MATLAB. Standards and exchange formats. Systems Biology Markup Language. Minimum Information Requested in the Annotation of Models. Minimum Information About a Simulation Experiment. Systems Biology Graphical Notation. Simulation Experiment Description Markup Language. Kyoto Encyclopedia of Genes and Genomes.
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/home.jsp
Browse Metabolites and Reactions. It is intended to be used as a platform for the display, comparison and distribution of fluxomics experimental result.We attempt to cover as more flux distribution results as possible. New flux data are added monthly after they appeared publicly. Please let us know if some research have escaped our attention, its our duty to add them! 1 doi: 10.1093/nar/gku1137. Submit a new study. Seo Ecoli Metabolome Database.
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/reactants_action
Browse Metabolites and Reactions. Seo Ecoli Metabolome Database.
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/compare.jsp
Browse Metabolites and Reactions. Please select at least tow. Enzyme Topology based similarity. Computation already begins.The result will be sended to you via e-mail. Please input valid e-mail,since this task might take a long time,the alignment result will be sent to your email. Lamda must be double value between 0.0 and 1.0. Seo Ecoli Metabolome Database.
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/help.jsp
Browse Metabolites and Reactions. What kinds of Data are stored in this database. How to browse database. About Interactive visualization of flux distribution. How to Search through the database. The algorithm details for the flux comparison. How to compare flux distributions. How to download flux distributions. How to submit Data. What kinds of Data are stored in this database. The citation information of the reference. The specific strain name of the organism if it was mentioned in the reference. The C...
cecafdb.org
CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.
http://www.cecafdb.org/submit_study.jsp
Browse Metabolites and Reactions. Seo Ecoli Metabolome Database.
mosim.org
Databases - Molecular Simulation Modeling
http://www.mosim.org/databases.html
Http:/ www.ebi.ac.uk/biomodels-main/publmodels. Free kinetic model library. Le Novère, N., B. Bornstein, et al. (2006). “BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.” Nucleic Acids Research. Http:/ bigg.ucsd.edu/. Free COBRA models and tools. . Biochemical Reaction Kinetics Database http:/ sabio.villa-bosch.de/. Proudly powered by Weebly.
