BRACHYPODIUM.ORG

shell.cgrb.oregonstate.edu

SERVICES | CGRB Bioinformatics Site | Oregon State University

https://shell.cgrb.oregonstate.edu/node/13

The CGRB Bioinformatics group provide services to researchers working around the world. Please look at our CGRB Core Labs website. This page showcases select resources hosted by CGBI participants. The Arabidopsis Small RNA Project seeks to characterize and functionally analyze the two major classes of endogenous small RNAs - microRNAs (miRNAs) and short-interferring RNAs (siRNAs). The Brachypodium distachyon model grass portal. Personal Sequence Database (PSD). Monitor the activity of the Genome cluster.

pathway.gramene.org

BrachyCyc Database Home, Metabolic Pathways in Brachypodium distachyon

http://pathway.gramene.org/brachycyc.html

Metabolic Pathways in Brachypodium: BrachyCyc Home. BrachyCyc ver 2.0. Genome data: Brachypodium distachyon. It may take 1-2 min to generate this view. Pathway Tools Omics Viewer. Upload the data sets. From gene expression, metabolomics, proteomics experiments to overlay and overview the profile in realtime. It may take more than 3-4 min to generate this view. A free copy of the BrachyCyc database in BioCyc. Developed by the SRI International. Developed and curated by. At SRI International. This is a...

gtrnadb2009.ucsc.edu

Genomic tRNA Database: Brachypodium distachyon (JGI v1.0 8X)

http://gtrnadb2009.ucsc.edu/Bdist

TRNAscan-SE Analysis of Brachypodium distachyon (JGI v1.0 8X). TRNAs Decoding Standard 20 AA. Possible suppressor tRNAs (CTA,TTA). Four Box tRNA Sets. TRNA Count by Anticodon. Six Box tRNA Sets. TRNA Count by Anticodon. Two Box tRNA Sets. TRNA Count by Anticodon. Two Box and Other tRNA Sets. TRNA Count by Anticodon. The Genomic tRNA Database is curated by Todd Lowe. And Patricia Chan. Please email lowe@soe.ucsc.edu.

ajmanzaneda.org

LINKS

http://ajmanzaneda.org/home/links.html

ANTONIO J. MANZANEDA WEB PAGES. PLANT ECOLOGY AND EVOLUTION AT UNIVERSITY OF JAÉN. Former or current collaborator labs and other pages. Pedro Rey Lab at the University of Jaén (Spain). Tom Mitchell-Olds lab at Duke Univ. (EEUU). Carlos M. Herrera lab at Estación Biológica de Doñana, CSIC, Seville (Spain). Pilar Catalan lab at University of Zaragoza, Huesca (Spain). Eric Scharnz lab at the Wageningen University (The Netherlands). Jill Anderson lab at the University of South Carolina (EEUU).

phytopathologie-hamburg.de

Phytopathologie Hamburg

http://www.phytopathologie-hamburg.de/site/links.html

BMBF: National Research Strategy BioEconomy 2030. BMBF: Nationale Forschungsstrategie BioÖkonomie 2030. The Arabidopsis Information Resource: TAIR. All about Brachypodium distachyon. Literature search: NCBI PubMed.

bamboogdb.com

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.com/page/datasummary.jsp

Table 1. BambooGDB data content and statistics as 12 August 2013. Expressed genes (FPKM1 1). 1 FPKM: Fragments Per Kilobase of transcript per Million mapped reads. 2 Heterozygous SNPs: Heterozygous Single Nucleotide Polymorphisms. 3 COG: Clusters of Orthologous Group. 4 PANTHER: Protein ANalysis THrough Evolutionary Relationships, one classification system of protein. 5 EC: Enzyme Commission. 6 GO: Gene Ontology. 7 KO: KEGG Ortholog. Table 2: 7 plant genomes using in BambooGDB database. RAP 20 (Nov 2007).

bamboogdb.org

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.org/page/datasummary.jsp

Table 1. BambooGDB data content and statistics as 12 August 2013. Expressed genes (FPKM1 1). 1 FPKM: Fragments Per Kilobase of transcript per Million mapped reads. 2 Heterozygous SNPs: Heterozygous Single Nucleotide Polymorphisms. 3 COG: Clusters of Orthologous Group. 4 PANTHER: Protein ANalysis THrough Evolutionary Relationships, one classification system of protein. 5 EC: Enzyme Commission. 6 GO: Gene Ontology. 7 KO: KEGG Ortholog. Table 2: 7 plant genomes using in BambooGDB database. RAP 20 (Nov 2007).

borevitzlab.anu.edu.au

Borevitz Lab | Light Adaptation – Arabidopsis & Brachypodium

http://borevitzlab.anu.edu.au/projects-overview/brachypodium-adaptation

Plant Genomics for Climate Adaptation. Light Adaptation – Arabidopsis & Brachypodium. Adaptation & The Extended Genotype of Brachypodium. Landscape Genomics – Eucalyptus. National Arboretum Phenomic Sensory Array. TraitCapture: Genomic modelling for plant phenomics under environmental stress. TrayScan – High Throughput Phenotyping Platform. Light Adaptation – Arabidopsis & Brachypodium. National Arboretum Phenomic Sensory Array. Adaptation & The Extended Genotype of Brachypodium. What is our strategy and...