campagnelab.org

Laboratory focus - Campagne Laboratory

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Instructions for Workflow Tutorial. Language Workbench and Composable Languages in Bioinformatics. Our lab studies how Language Workbench technology can help transform how we perform analysis of biological data. See our latest prototypes: MetaR. Part of the NYoSh Analysis Workbench. And BDval for MPS. Study of the function of th...

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Laboratory focus - Campagne Laboratory | campagnelab.org Reviews

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Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Instructions for Workflow Tutorial. Language Workbench and Composable Languages in Bioinformatics. Our lab studies how Language Workbench technology can help transform how we perform analysis of biological data. See our latest prototypes: MetaR. Part of the NYoSh Analysis Workbench. And BDval for MPS. Study of the function of th...

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Laboratory focus - Campagne Laboratory | campagnelab.org Reviews

https://campagnelab.org

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Instructions for Workflow Tutorial. Language Workbench and Composable Languages in Bioinformatics. Our lab studies how Language Workbench technology can help transform how we perform analysis of biological data. See our latest prototypes: MetaR. Part of the NYoSh Analysis Workbench. And BDval for MPS. Study of the function of th...

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campagnelab.org

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Configure Goby - Campagne Laboratory

http://campagnelab.org/software/goby/configure

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Installation instructions (MetaR 1.3 ). Instructions for Workflow Tutorial. This page describes how to configure Goby. Including goby in your execution PATH. Please note that at this time Goby is compatible with Java6. Compatibility with Java7 will be addressed in a future release. Each mode has its own help, accessible with the...

2

Software - Campagne Laboratory

http://campagnelab.org/software

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Installation instructions (MetaR 1.3 ). Instructions for Workflow Tutorial. Our laboratory has developed a number of software tools, including:. Blending user interfaces and scripting to help biologist analyze data. And BDVal for MPS. High-performance next-gen data management framework. Biomedical search engine ( Twease/Medline.

3

License - Campagne Laboratory

http://campagnelab.org/software/gobyweb/distribution

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Installation instructions (MetaR 1.3 ). Instructions for Workflow Tutorial. Facebook’s Artificial Intelligence Research lab releases open source fastText on GitHub https:/ t.co/a9UVBF7LZy. 04:43:30 PM August 21, 2016. Have a go at it and let us know if you have any question. See chat room here: https:/ t.co/4zIpHpuRLy.

4

Quick demo - Campagne Laboratory

http://campagnelab.org/software/goby/quick-demo

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Installation instructions (MetaR 1.3 ). Instructions for Workflow Tutorial. The following steps demonstrate how Goby handles the simple data analysis task of aligning RNA-Seq reads to a reference and generating a wiggle track. This short demo assumes you have downloaded. 1a Aligning with FASTA/FASTQ to Goby alignment format:.

5

Getting Started - Campagne Laboratory

http://campagnelab.org/software/goby/getting-started-april-2011

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Installation instructions (MetaR 1.3 ). Instructions for Workflow Tutorial. The following steps demonstrate how Goby handles the simple data analysis task of aligning RNA-Seq reads to a reference and generating a wiggle track. This example assumes that you have already:. Downloaded the Goby source distribution [ here. Is used fo...

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jetbrains.com

MPS overview

http://www.jetbrains.com/mps

Check out our IDEs. The most intelligent Java IDE. Python IDE for professional developers. The most intelligent Ruby IDE. The smartest JavaScript IDE. Smart IDE for iOS/OS X development. A smart cross-platform IDE for C and C. Your Swiss Army knife for databases and SQL. A cross-platform C# IDE based on IntelliJ platform and ReSharper. Check out our tools for .NET and Visual Studio. Visual Studio extension for .NET developers. Visual Studio extension for C developers. Check out our tools for teams. Fast ...

cryptogenomicon.org

High throughput sequencing for neuroscience | Cryptogenomicon

https://cryptogenomicon.org/2014/11/01/high-throughput-sequencing-for-neuroscience

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. High throughput sequencing for neuroscience. November 1, 2014. I’ve been thinking about how we do “bioinformatics” in experimental biology, and I had the opportunity to talk about it recently. The following is the transcript of a keynote address I gave at Janelia’s meeting on. High Throughput Sequencing for Neuroscience. In fact, Oliver’s been trash talking computational biology and genomics for some time now, and he...

mbeddr.com

mbeddr - engineering the future of embedded software

http://mbeddr.com/mps.html

JetBrains’ Meta Programming System. Is an open source projectional language workbench licensed under Apache 2.0. Editing the tree as opposed to real text needs some accustomization. Without specific adaptations, every program element has to be selected from a drop-down list and "instantiated". However, MPS provides editor customizations to enable editing that resembles modern IDEs that use automatically expanding code templates. To learn more about MPS please see jetbrains.com/mps. Read and Learn: Papers.

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campagnelab.org

Laboratory focus - Campagne Laboratory

Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Instructions for Workflow Tutorial. Language Workbench and Composable Languages in Bioinformatics. Our lab studies how Language Workbench technology can help transform how we perform analysis of biological data. See our latest prototypes: MetaR. Part of the NYoSh Analysis Workbench. And BDval for MPS. Study of the function of th...

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