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Usage — caspo 3.0.2.dev0 documentation
http://caspo.readthedocs.io/en/latest/usage.html
Input and output files in caspo. Are mostly comma separated values (csv) files. Next, we describe all files either consumed or produced when running caspo. A prior knowledge network (PKN) is given using the simple interaction format (SIF). Lines in the SIF file must specify a source node, an edge sign (1 or -1), and one target node. Note that SIF format specification also consider several target nodes per line but this is not supported in caspo. Have a positive influence over. In the following example,.
Install — caspo 3.0.2.dev0 documentation
http://caspo.readthedocs.io/en/latest/install.html
In what follows we describe three alternative ways to install caspo. Note that using pip requires the user to install all dependencies manually. Since installing such dependecies requires basic skills on how to compile and deploy third-party python packages it is only recommended for experienced users. Therefore, we recommend less experienced users to use either Docker or Anaconda. Follow the instructions to install Docker at http:/ docs.docker.com. With docker. Usually, caspo. Chmod a x caspo. Next, go ...
API Reference — caspo 3.0.2.dev0 documentation
http://caspo.readthedocs.io/en/latest/api.html
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Python Module Index — caspo 3.0.2.dev0 documentation
http://caspo.readthedocs.io/en/latest/py-modindex.html
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Core — caspo 3.0.2.dev0 documentation
http://caspo.readthedocs.io/en/latest/core.html
Experimental setup describing stimuli, inhibitors and readouts species names. 8211; List of stimuli species. 8211; List of inhibitors species. 8211; List of readouts species. Returns the sum of stimuli, inhibitors, and readouts. Sum of stimuli, inhibitors, and readouts. Iterates over all possible clampings of this experimental setup. 8211; If given, restricts clampings over given species names. 8211; The next clamping with respect to the experimental setup. 8211; List of logical networks. Object instance...
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caspo by bioasp
http://bioasp.github.io/caspo
Reasoning on the response of logical signaling networks with Answer Set Programming. Download .tar.gz. Reasoning on the response of logical signaling networks. Would allow for identifying admissible large-scale logic models saving a lot of efforts and without any a priori bias. Next, once a family a logical networks has been identified, one can suggest or design new experiments. In order to reduce the uncertainty provided by this family. Finally, one can look for intervention strategies. Learning Boolean...
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