The CellOrganizer project provides tools for learning generative models of cell organization directly from images storing and retrieving those models synthesizing cell images (or other representations) from one or more models Model learning captures variation among cells in a collection of images. Images used for model learning and instances synthesized from models can be two- …
http://www.cellorganizer.org/
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Home - CellOrganizer | cellorganizer.org Reviews
https://cellorganizer.org
The CellOrganizer project provides tools for learning generative models of cell organization directly from images storing and retrieving those models synthesizing cell images (or other representations) from one or more models Model learning captures variation among cells in a collection of images. Images used for model learning and instances synthesized from models can be two- …
cellorganizer.org
CellOrganizer: Publications
http://www.cellorganizer.org/Publications
Publications on Generative Models of Subcellular Organization. K T Roybal, T. E. Buck, X. Ruan, B. H. Cho, D. J. Clark, R. Ambler, H. M. Tunbridge, J. Zhang, P. Verkade, C. WÃ lfing, and R. F. Murphy (2016) Computational spatiotemporal analysis identifies WAVE2 and Cofilin as joint regulators of costimulation-mediated T cell actin dynamics. R F Murphy (2016) Building cell models and simulations from microscope images. 33-39 (Special Issue on High-throughput Imaging). PLoS Computational Biology 12:. TE Bu...
CellOrganizer: Downloads: v2.0
http://www.cellorganizer.org/Downloads/v2.0
CellOrganizer releases for the 2.0 family are continuously tested using. Matlab Unit Testing Framework. In-Home Low Level Tests (for compatibility with old releases of Matlab). Ubuntu 12 .04. NS (not supported/won't test). Has been provided by grants GM075205 and GM090033 from the National Institute of General Medical Sciences. By a Forschungspreis from the Alexander von Humboldt Foundation. And by the School of Life Sciences of the Freiburg Institute for Advanced Studies.
CellOrganizer: Downloads
http://www.cellorganizer.org/Downloads
New Release (August 1, 2016):. CellOrganizer version 2.5.1. Previous Release (May 31, 2016):. CellOrganizer version 2.5. Previous Release (September 16, 2015):. CellOrganizer version 2.4. Previous Release (May 19, 2015): CellOrganizer version 2.3. Previous Release (April 27, 2015): CellOrganizer version 2.2. Previous Release (April 29, 2014): CellOrganizer version 2.1. Previous Release (September 30, 2013): CellOrganizer version 2.0. Previous Release (May 17, 2013):. CellOrganizer version 1.9.0.
CellOrganizer: People
http://www.cellorganizer.org/people.html
Robert F. Murphy. Gregory R. Johnson. Has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences. Grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation. By a Forschungspreis from the Alexander von Humboldt Foundation. And by the Freiburg Institute for Advanced Studies.
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Murphy Lab | Software
http://murphylab.cbd.cmu.edu/software
Center for Bioimage Informatics. Murphy Lab - Software. OMEROsearcher LocalClient v1.3. July 11, 2013]. September 30, 2013]. February 3, 2013]. OMEROsearcher Server v1.1.2. For OMERO version 4.3.3) [May 16, 2012]. PSLID and SLIC Software Distributions. Software from published papers (Reproducible Research Archives). Last Updated: 21 Oct 2013.
MMBioS Software
http://www.mmbios.org/index.php/software
NIH Biomedical Technology and Research Resource (BTRR). Technology Research and Development. EAB Meeting Fall 2015. EAB Meeting Fall 2014. EAB Meeting Fall 2013. How to Acknowledge Us. The following software tools and services, developed by MMBioS partners, are freely available to the biomedical community. We ask that any publications resulting from their use include an acknowledgement. Elastic Network Models (ENM). CellBlender is a Blender addon for creation, simulation, visualization, and analysis of r...
MMBios Image Processing Research
http://www.mmbios.org/index.php/component/fpss/track/2/L2luZGV4LnBocC9yZXNlYXJjaC90ZWNobm9sb2d5LXJlc2VhcmNoLWFuZC1kZXZlbG9wbWVudC9pbWFnZS1wcm9jZXNzaW5n
NIH Biomedical Technology and Research Resource (BTRR). Technology Research and Development. EAB Meeting Fall 2015. EAB Meeting Fall 2014. EAB Meeting Fall 2013. How to Acknowledge Us. TR&D3: Image processing and analysis, with an emphasis on analysis of cell and tissue organization in support of modeling. Example synthetic 3D image for HeLa cells. To meet these challenges, we are focusing on three areas:. This software will include interfaces which provide new capabilities to cell simulation software su...
Tutorial Presentations
http://www.mmbios.org/index.php/outreach/tutorial-presentations
NIH Biomedical Technology and Research Resource (BTRR). Technology Research and Development. EAB Meeting Fall 2015. EAB Meeting Fall 2014. EAB Meeting Fall 2013. How to Acknowledge Us. Tutorial presentations given by MMBioS investigators are listed on this page. Many software packages developed by MMBioS partners include online tutorials; see the listing for each package on the Software page. Gregory Johnson, Carnegie Mellon University, Pittsburgh, PA, USA. Research Internship and Visitor Programs.
Murphy Lab | Software
http://murphylab.web.cmu.edu/software
Center for Bioimage Informatics. Murphy Lab - Software. OMEROsearcher LocalClient v1.3. July 11, 2013]. September 30, 2013]. February 3, 2013]. OMEROsearcher Server v1.1.2. For OMERO version 4.3.3) [May 16, 2012]. PSLID and SLIC Software Distributions. Software from published papers (Reproducible Research Archives). Last Updated: 21 Oct 2013.
Software | Computational Biology Department
http://www.cbd.cmu.edu/software.html
What is Computational Biology? List of Educational Programs in Computational Biology. CBD at a Glance. PhD in Computational Biology. MS in Computational Biology. MS in Biotech Innovation and Computation. BS in Computational Biology. Why Major in Computational Biology? Sample Course Sequence for Computational Biology Majors. Minor in Computational Biology. Computational Biology Technical Reports. Apply to Ph.D. Program. Apply to Undergraduate Program. What is Computational Biology? CBD at a Glance. DECOD ...
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Home - CellOrganizer
Version 2.7.0. Version 2.6.0. Version 2.5.2. Version 2.5.1. Version 2.5.0. Versions 2.0-2.4. What can I do with CellOrganizer? Version 2.7.0. Version 2.6.0. Version 2.5.2. Version 2.5.1. Version 2.5.0. Versions 2.0-2.4. What can I do with CellOrganizer? Project provides tools for. Learning generative models of cell organization directly from images. Storing and retrieving those models. Synthesizing cell images (or other representations) from one or more models. Can learn models of. Version 2.7.0. Grants ...
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