CEpBrowser (Comparative Epigenome Browser) is a gene-centric genome browser that visualize the genomic features of multiple species with color-coded orthologous regions, aiding users in comparative genomic research. The genome browser is adapted from UCSC Genome Browser and the orthologous regions are generated from cross-species lift-over pairs.
http://www.cepbrowser.org/
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CEpBrowser (Comparative epigenome browser) | cepbrowser.org Reviews
https://cepbrowser.org
CEpBrowser (Comparative Epigenome Browser) is a gene-centric genome browser that visualize the genomic features of multiple species with color-coded orthologous regions, aiding users in comparative genomic research. The genome browser is adapted from UCSC Genome Browser and the orthologous regions are generated from cross-species lift-over pairs.
Single Cell Data Browser (powered by GIVe)
Single-cell RNA-Seq Genome Browser. The Single-cell RNA-Seq Genome Browser presents 49 new single-cell RNA-seq datasets ( Biase. Along with mouse genome assembly GRCm38 (mm10) for comparative studies. Published RNA-seq datasets of. Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. 30, 777-782 [ PUBMED. For questions, please contact Xiaoyi Cao ( x9cao at. Do not show automatically in the future.
cepbrowser.org
CEpBrowser (Comparative epigenome browser)
http://www.cepbrowser.org/index.php
Gene / Region Query. Track Selection and Data Download. Gene / Region Selection. There is no orthologous region in that section. Tracks can be turn on/off via the checkboxes below. Common tracks from ENCODE. Tracks with insignificant signals. Unique tracks from ENCODE. Your browser doesn't support iframe tag. You need a browser supporting iframe tag to use Comparison Browser. (Latest versions of mainstream browsers should all support this tag.). Hint: tracks can be turned on / off via the track selection.
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Zhong Lab - Software
http://systemsbio.ucsd.edu/software.html
4D Nucleome web portal. This web portal is the first entry point for biomedical researchers and scientists to the 4D Nucleome (4DN) network. 4DN resources, data, and protocols can be retrieved through this web portal. Single cell transcriptome browser. Single cell browser organizes and visualizes single cell RNA-seq datasets. Single cell data of mouse oocytes and preimplantation embryos are pre-loaded in this browser. The web-based comparative epigenome browser ( CEpBrowser. PerEditor changes the referen...
Zhong Lab - Research
http://systemsbio.ucsd.edu/index.html
We discovered transposon-mediated re-wiring of transcription networks that govern pre-implantation embryonic development [. 2010] We contributed to initiating comparative epigenomics, a research field that studies genomic functions by cross-species epigenomic comparison [. 2012] We contributed to the derivation of the rules of dynamic gene regulation and temporal epigenomic changes [. Single cell analysis of cell fate. Evolution of mammalian gene regulatory networks. We brought evolutionary biology ideas...
Zhong Lab - Publications
http://systemsbio.ucsd.edu/publication.html
Mapping RNA-RNA interactome and RNA structure in vivo by MARIO. Tri C Nguyen, Xiaoyi Cao, Pengfei Yu, Shu Xiao, Jia Lu, Fernando H. Biase, Bharat Sridhar, Norman Huang, Kang Zhang, Sheng Zhong. Lens regeneration using endogenous stem cells with gain of visual function. 531: 323-328. Abstract. GeNemo: a search engine for web-based functional genomic data. Yongqing Zhang, Xiaoyi Cao, Sheng Zhong. In press. Text. News coverage: HIT Consultant. Fernando H. Biase, Xiaoyi Cao, Sheng Zhong. Comparative epigenom...
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CEpBrowser (Comparative epigenome browser)
Gene / Region Query. Track Selection and Data Download. Gene / Region Selection. There is no orthologous region in that section. Tracks can be turn on/off via the checkboxes below. Common tracks from ENCODE. Tracks with insignificant signals. Unique tracks from ENCODE. Your browser doesn't support iframe tag. You need a browser supporting iframe tag to use Comparison Browser. (Latest versions of mainstream browsers should all support this tag.). Hint: tracks can be turned on / off via the track selection.
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