cisbp.ccbr.utoronto.ca

CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

CIS-BP Database: Catalog of Inferred Sequence Binding Preferences. Welcome to CIS-BP, the online library of transcription factors and their DNA binding motifs. Search for a TF. Eg Gata*, YEL009C, I$FTZ 01). Browse TFs / Restrict Search for TFs. Avian sarcoma virus 17. Bovine papillomavirus type 2. Sarsia sp. Long Island Sound. PBM, CSA and or DIP-chip. Database build 1.02 now available! Last updated: Apr 5th, 2015 Database Build 1.02.

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CIS-BP Database: Catalog of Inferred Sequence Binding Preferences | cisbp.ccbr.utoronto.ca Reviews

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CIS-BP Database: Catalog of Inferred Sequence Binding Preferences. Welcome to CIS-BP, the online library of transcription factors and their DNA binding motifs. Search for a TF. Eg Gata*, YEL009C, I$FTZ 01). Browse TFs / Restrict Search for TFs. Avian sarcoma virus 17. Bovine papillomavirus type 2. Sarsia sp. Long Island Sound. PBM, CSA and or DIP-chip. Database build 1.02 now available! Last updated: Apr 5th, 2015 Database Build 1.02.

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CIS-BP Database: Catalog of Inferred Sequence Binding Preferences | cisbp.ccbr.utoronto.ca Reviews

https://cisbp.ccbr.utoronto.ca

CIS-BP Database: Catalog of Inferred Sequence Binding Preferences. Welcome to CIS-BP, the online library of transcription factors and their DNA binding motifs. Search for a TF. Eg Gata*, YEL009C, I$FTZ 01). Browse TFs / Restrict Search for TFs. Avian sarcoma virus 17. Bovine papillomavirus type 2. Sarsia sp. Long Island Sound. PBM, CSA and or DIP-chip. Database build 1.02 now available! Last updated: Apr 5th, 2015 Database Build 1.02.

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cisbp.ccbr.utoronto.ca

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CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

http://cisbp.ccbr.utoronto.ca/stats.php

CIS-BP Database: Catalog of Inferred Sequence Binding Preferences. Breakdown by data type. Last updated: Apr 5th, 2015 Database Build 1.02. Current database contents: 59998 TFs with at least one binding motif (3202 from direct experiments), out of a total of 167081 Eukaryotic TFs from 263 families in 340 species.

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Cis-BP Links

http://cisbp.ccbr.utoronto.ca/links.html

Other TF DNA binding motif databases. Human Motifs derived from ENCODE ChIP-seq experiments. Fly TF motifs derived from Bacterial one-hybrid (B1H) experiments. Human and Mouse motifs derived from ChIP-seq experiments. Human motifs collected and curated from various sources. Motifs collected and curated from various sources. Motifs collected and curated from various sources. PBM motifs and data. Publications from which data was taken (First author/Year/PMID/Description):. Lesch et al. 2009 (19204119):...

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Update Log for Cis-BP

http://cisbp.ccbr.utoronto.ca/update.html

This build contains the data used in the associated publication (Weirauch et al., Cell 2014). This build was "recalled" because it was pointed out that many of the motifs we included from the latest version of Transfac were based on purely computational predictions, which is in direct conflict with our definition of a "Directly" determined motif (Direct motifs must be obtained from an experimental assay). This is the first official build of the database (released on October 28, 2014).

4

Cis-BP FAQ

http://cisbp.ccbr.utoronto.ca/faq.html

CisBP is a collaborative effort between the labs of Tim Hughes (University of Toronto) and Matt Weirauch (Cincinnati Children s Hospital). It originated while Matt was a postdoc in Tim s lab. In addition to Matt and Tim, extensive contributions have been made by Ally Yang (experimental) and Mihai Albu (database/web server). How should I cite CisBP? Please cite our paper:. Determination and inference of eukaryotic transcription factor sequence specificity. How do you identify your TFs? TFs are identified ...

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CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

http://cisbp.ccbr.utoronto.ca/index.php

CIS-BP Database: Catalog of Inferred Sequence Binding Preferences. Welcome to CIS-BP, the online library of transcription factors and their DNA binding motifs. Search for a TF. Eg Gata*, YEL009C, I$FTZ 01). Browse TFs / Restrict Search for TFs. Avian sarcoma virus 17. Bovine papillomavirus type 2. Sarsia sp. Long Island Sound. PBM, CSA and or DIP-chip. Database build 1.02 now available! Last updated: Apr 5th, 2015 Database Build 1.02.

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hugheslab.ccbr.utoronto.ca

HughesData - Main - Hughes Lab

http://hugheslab.ccbr.utoronto.ca/twiki/bin/view/Main/HughesData

Yeast mRNA expression data. Mouse mRNA expression data. Yeast noncoding RNA data. Mouse noncoding RNA data. Other data types, tools, etc. Van Bakel et al., 2011, Genome Biology. The draft genome and transcriptome of Cannabis sativa.". Narasimhan et al., 2015, eLife. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.". Weirauch et al., 2014, Cell. Determination and inference of eukaryotic transcription factor sequence specificity.". Ray et al., 2013, Nature. Create...

hugheslab.med.utoronto.ca

HughesData - Main - Hughes Lab

http://hugheslab.med.utoronto.ca/twiki/bin/view/Main/HughesData

Yeast mRNA expression data. Mouse mRNA expression data. Yeast noncoding RNA data. Mouse noncoding RNA data. Other data types, tools, etc. Van Bakel et al., 2011, Genome Biology. The draft genome and transcriptome of Cannabis sativa.". Narasimhan et al., 2015, eLife. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.". Weirauch et al., 2014, Cell. Determination and inference of eukaryotic transcription factor sequence specificity.". Ray et al., 2013, Nature. Create...

hsnajafabadi.wordpress.com

Links | Hamed S. Najafabadi's Homepage

https://hsnajafabadi.wordpress.com/links

Hamed S. Najafabadi's Homepage. Meta name=Hamed S. Najafabadi's Homepage content= /. DATABASES, TOOLS AND SOFTWARE. Recognition Code-Assisted Discovery of regulatory Elements. Prediction of DNA binding preferences of C2H2-ZF proteins. The online library of transcription factors and their motifs. The online library of RNA binding proteins and their motifs. Tool for Eliciting Informative Structural Elements in RNA. Conserved Structural Motif Search Tool. Hypergeometric-based analysis of sequence motifs.

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CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Welcome to CIS-BP-RNA, the online library of RNA binding proteins and their motifs. Search for an RBP. Eg Puf*, YOR359W, RNCMPT00046). Browse RBPs / Restrict Search for RBPs. Latest build: 0.6. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

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CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

CIS-BP Database: Catalog of Inferred Sequence Binding Preferences. Welcome to CIS-BP, the online library of transcription factors and their DNA binding motifs. Search for a TF. Eg Gata*, YEL009C, I$FTZ 01). Browse TFs / Restrict Search for TFs. Avian sarcoma virus 17. Bovine papillomavirus type 2. Sarsia sp. Long Island Sound. PBM, CSA and or DIP-chip. Database build 1.02 now available! Last updated: Apr 5th, 2015 Database Build 1.02.

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