cisbp-rna.ccbr.utoronto.ca

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Welcome to CIS-BP-RNA, the online library of RNA binding proteins and their motifs. Search for an RBP. Eg Puf*, YOR359W, RNCMPT00046). Browse RBPs / Restrict Search for RBPs. Latest build: 0.6. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

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CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins | cisbp-rna.ccbr.utoronto.ca Reviews

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CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Welcome to CIS-BP-RNA, the online library of RNA binding proteins and their motifs. Search for an RBP. Eg Puf*, YOR359W, RNCMPT00046). Browse RBPs / Restrict Search for RBPs. Latest build: 0.6. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

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CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins | cisbp-rna.ccbr.utoronto.ca Reviews

https://cisbp-rna.ccbr.utoronto.ca

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Welcome to CIS-BP-RNA, the online library of RNA binding proteins and their motifs. Search for an RBP. Eg Puf*, YOR359W, RNCMPT00046). Browse RBPs / Restrict Search for RBPs. Latest build: 0.6. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

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cisbp-rna.ccbr.utoronto.ca

1

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

http://cisbp-rna.ccbr.utoronto.ca/TFTools.php

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Scan an RNA sequence for potential binding sites. Please use a FASTA format submission. 7 mers - Escores. Scan RBPs in my cart. Scan an amino acid sequence to predict its binding motif. Compare a given motif to all RBPs in the database. Last updated: - Database Build 0.6.

2

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

http://cisbp-rna.ccbr.utoronto.ca/bulk.php

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. C2H2 ZF,CCCH ZF. C2H2 ZF,CCHC ZF. C2H2 ZF,RanBP ZF,RRM. CCCH ZF,CCHC ZF. CCCH ZF,CCHC ZF,RanBP ZF. CCCH ZF,CCHC ZF,RRM. CCCH ZF,RanBP ZF. CCCH ZF,RanBP ZF,RRM. CCHC ZF,CSD,RRM. CCHC ZF,CSD,S1. CCHC ZF,KH,RanBP ZF. CCHC ZF,KH,RRM. CCHC ZF,RanBP ZF. KH,RanBP ZF,RRM. Last updated: - Database Build 0.6.

3

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

http://cisbp-rna.ccbr.utoronto.ca/cart.php

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Your Shopping Cart contains: 0. Remove all RBPs from cart. Download RBPs in cart. Last updated: - Database Build 0.6.

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CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

http://cisbp-rna.ccbr.utoronto.ca/stats.php

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Breakdown by data type. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

5

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

http://cisbp-rna.ccbr.utoronto.ca/index.php

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Welcome to CIS-BP-RNA, the online library of RNA binding proteins and their motifs. Search for an RBP. Eg Puf*, YOR359W, RNCMPT00046). Browse RBPs / Restrict Search for RBPs. Latest build: 0.6. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

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aura.science.unitn.it

AURA - Atlas of UTR Regulatory Activity

http://aura.science.unitn.it/download

Basic annotations, variations, half-life, uncoupling, trans-factors and cis-elements data are contained, along with the table structure, in the MySQL database dump which you can download below. AURA mysql dump.sql.gz. A reduced form of the database, called AURAlight and including only regulatory sites for trans-factors and cis-elements on UTRs, with position, factor and UTR identity can be downloaded below. Here you can download several files containing annotation that can be used right away with DynaMIT.

aura.science.unitn.it

AURA - Atlas of UTR Regulatory Activity

http://aura.science.unitn.it/cite

How to cite AURA. Please cite AURA in your publications as follows:. Dassi E, Re A, Leo S, Tebaldi T, Pasini L, Peroni D and Quattrone A. (2014). AURA 2: Empowering discovery of post-transcriptional networks. The paper is open access and can be downloaded here. AREsite: a database for the comprehensive investigation of AU-rich elements. A compendium of RNA-binding motifs for decoding gene regulation. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

hugheslab.ccbr.utoronto.ca

HughesData - Main - Hughes Lab

http://hugheslab.ccbr.utoronto.ca/twiki/bin/view/Main/HughesData

Yeast mRNA expression data. Mouse mRNA expression data. Yeast noncoding RNA data. Mouse noncoding RNA data. Other data types, tools, etc. Van Bakel et al., 2011, Genome Biology. The draft genome and transcriptome of Cannabis sativa.". Narasimhan et al., 2015, eLife. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.". Weirauch et al., 2014, Cell. Determination and inference of eukaryotic transcription factor sequence specificity.". Ray et al., 2013, Nature. Create...

hugheslab.med.utoronto.ca

HughesData - Main - Hughes Lab

http://hugheslab.med.utoronto.ca/twiki/bin/view/Main/HughesData

Yeast mRNA expression data. Mouse mRNA expression data. Yeast noncoding RNA data. Mouse noncoding RNA data. Other data types, tools, etc. Van Bakel et al., 2011, Genome Biology. The draft genome and transcriptome of Cannabis sativa.". Narasimhan et al., 2015, eLife. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.". Weirauch et al., 2014, Cell. Determination and inference of eukaryotic transcription factor sequence specificity.". Ray et al., 2013, Nature. Create...

hsnajafabadi.wordpress.com

Links | Hamed S. Najafabadi's Homepage

https://hsnajafabadi.wordpress.com/links

Hamed S. Najafabadi's Homepage. Meta name=Hamed S. Najafabadi's Homepage content= /. DATABASES, TOOLS AND SOFTWARE. Recognition Code-Assisted Discovery of regulatory Elements. Prediction of DNA binding preferences of C2H2-ZF proteins. The online library of transcription factors and their motifs. The online library of RNA binding proteins and their motifs. Tool for Eliciting Informative Structural Elements in RNA. Conserved Structural Motif Search Tool. Hypergeometric-based analysis of sequence motifs.

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cisbp-rna.ccbr.utoronto.ca

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins. Welcome to CIS-BP-RNA, the online library of RNA binding proteins and their motifs. Search for an RBP. Eg Puf*, YOR359W, RNCMPT00046). Browse RBPs / Restrict Search for RBPs. Latest build: 0.6. Last updated: - Database Build 0.6. Current database contents: 8056 RBP binding motifs(250 from direct experiments), out of a total of 62587 Eukaryotic RBPs from 55 families in 289 species.

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