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Compagen - A comparative genomics platform for early branching Metazoa

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 9th April, 2015 - New DataSets for for. Transcripts and Protein translations). They are available in the DataSets and Blast sections:. 29th October, 2014 - New DataSets for for. Authors: Marcin Adamski-marcin....

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Compagen - A comparative genomics platform for early branching Metazoa | compagen.zoologie.uni-kiel.de Reviews
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Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 9th April, 2015 - New DataSets for for. Transcripts and Protein translations). They are available in the DataSets and Blast sections:. 29th October, 2014 - New DataSets for for. Authors: Marcin Adamski-marcin&#46...
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Compagen - A comparative genomics platform for early branching Metazoa | compagen.zoologie.uni-kiel.de Reviews

https://compagen.zoologie.uni-kiel.de

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 9th April, 2015 - New DataSets for for. Transcripts and Protein translations). They are available in the DataSets and Blast sections:. 29th October, 2014 - New DataSets for for. Authors: Marcin Adamski-marcin&#46...

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Compagen - A comparative genomics platform for early branching Metazoa

http://compagen.zoologie.uni-kiel.de/links.html

Links and External Resources. Genome browser (CIG - JGI). Genome browser provided by the Center of Integrative Genomics (UC Berkeley) and the DOE Joint Genome Institute. Genome browser - Joint Genome Institute (JGI). Genome assembly 1.0 constructed with the JGI assembler, Jazz, includes approximately 7.8X WGS in small insert end-sequence coverage. OIST Marine Genomics Unit - Genome Projects. Group of Professor Noriyuki Satoh provides genome browsers of. NCBI Sequence Read Archive (SRA).

2

Compagen - A comparative genomics platform for early branching Metazoa

http://compagen.zoologie.uni-kiel.de/haep_atlas.html

This tool allows you to compare expression of genes in ectodermal epithelia cells, endodermal epithelia cells and i-cells of a polyp. Expression data was obtained by FACS sorting of eGFP labelled cells followed by 454 sequencing. Numbers in the table represent the amount of raw reads per cluster. WT (wild type transcriptome). ECTO (ectodermal epithelial cells). ENDO (endodermal epithelial cells). Where the expression is:. Greater or equal ( = ). Less or equal (. For folds (e.g. 2.5 or 10).

3

Compagen - A comparative genomics platform for early branching Metazoa

http://compagen.zoologie.uni-kiel.de/haep_sql.php

To retrieve data please use standard SQL queries (e.g. select * from expression info). Small introduction with examples is available here. Table information will be listed here. Write your SQL query here:. Limit Query results to:. Rows (0 for no limits). Results will be listed here. Workgroup of Prof. T.C.G. Bosch, Zoological Institute, University of Kiel, D-24118 Kiel, Germany.

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Compagen - A comparative genomics platform for early branching Metazoa

http://compagen.zoologie.uni-kiel.de/about.html

Compagen is a project created and supported by the Prof. T.C.G. Bosch's workgroup. Into the Zoology Institute of the Christian-Albrechts-Universität. Workgroup of Prof. T.C.G. Bosch, Zoological Institute, University of Kiel, D-24118 Kiel, Germany.

5

Compagen - A comparative genomics platform for early branching Metazoa

http://compagen.zoologie.uni-kiel.de/datasets.html

To show the DataSets (multi-sequence fasta files) please select the specie from the list:. Please, select a specie. Hydra magnipapillata sf-1 (HMAGsf1). Hydra vulgaris AEP (HAEP). Oscarella sp. (Osp.). They will be listed here. The datasets have the following naming convention:. Date of construction in YYMMDD format. EST dataset from February 14, 2007.). Detailed explanation for the Species Code:. Detailed explanation for the DataSet type:. Whole genome shotgun (raw reads).

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HydraDB | Reset Password

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Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. HydraDB.org™ Wiki Pages. 1501 West Bradley Avenue, Peoria IL 61625 (309) 676-7611.

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HydraDB | Citing HydraDB

http://hydradb.org/index.php/show/citation

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. Citing the Hydra magnipapillata. The dynamic genome of Hydra. Chapman JA, et al. Nature. 2010 Mar 25;464(7288):592-6. HydraDB.org™ Wiki Pages.

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HydraDB | Gene Details

http://hydradb.org/index.php/feature/details/LOC101235712

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. No Data fetched for Gene Ontology Annotations. No Data fetched for Domains. No expression data available at this time. RSP5 E3 ubiquitin ligase of th.

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HydraDB | Edit Guide

http://hydradb.org/index.php/show/editguide

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. Gene Annotation at HydraDB. GENE NAME: EDIT GUIDE. Before choosing an abbreviation for your gene, you may wish to check Saccharomyces Genome Database. Headlines a...

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HydraDB | About HydraDB

http://hydradb.org/index.php/home/aboutus

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. TGD Wiki; ciliate.org. Or tet.ciliate.org. Eisen, et al. 2006. Stover, et al. 2006. IchDB; ich.ciliate.org. Coyne, et al. 2011. Stover, et al. 2012. Mike Bowen, MS.

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HydraDB | Gene Paragraphs No Loaded

http://hydradb.org/index.php/show/paragraphs

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. Gene Paragraphs at HydraDB. HyBra2 transcripts are trans-spliced. HydraDB.org™ Wiki Pages. 1501 West Bradley Avenue, Peoria IL 61625 (309) 676-7611.

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HydraDB | HydraDB Genome Files

http://hydradb.org/index.php/home/downloads

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. 59833 KB - Modified: 11/04/2013. Hydra magnipapillata cds.fsa. 23940 KB - Modified: 10/25/2013. Hydra magnipapillata assembly.fsa. 844408 KB - Modified: 10/25/2013.

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HydraDB | List of Named Genes

http://hydradb.org/index.php/show/namedgenes

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. Named Genes at HydraDB. HydraDB.org™ Wiki Pages. 1501 West Bradley Avenue, Peoria IL 61625 (309) 676-7611.

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HydraDB | Gene Details

http://hydradb.org/index.php/feature/details/LOC100192450

Click Here to Register. Siebert S, Juliano CE (2016) Sex, polyps, and medusae: Determination and maintenance of sex in cnidarians. Molecular reproduction and development. Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S (2016) De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. Zoological science. Flp protein (flp), mRNA. No Data fetched for Gene Ontology Annotations. No Data fetched for Domains. No expression data available at this time.

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Compagen - A comparative genomics platform for early branching Metazoa

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 4th March, 2016 - New Transcriptome and Proteome for. They are available in the DataSets and Blast sections:. Reference: Hologenome analysis of two marine sponges with different microbiomes. Reference: Guzman, C&...

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Compagen - A comparative genomics platform for early branching Metazoa

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 9th April, 2015 - New DataSets for for. Transcripts and Protein translations). They are available in the DataSets and Blast sections:. 29th October, 2014 - New DataSets for for. Authors: Marcin Adamski-marcin&#46...

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