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Compagen - A comparative genomics platform for early branching Metazoa

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 4th March, 2016 - New Transcriptome and Proteome for. They are available in the DataSets and Blast sections:. Reference: Hologenome analysis of two marine sponges with different microbiomes. Reference: Guzman, C&...

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Compagen - A comparative genomics platform for early branching Metazoa | compagen.org Reviews

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Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 4th March, 2016 - New Transcriptome and Proteome for. They are available in the DataSets and Blast sections:. Reference: Hologenome analysis of two marine sponges with different microbiomes. Reference: Guzman, C&...

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4 hydra vulgaris

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6 aep atlas

7 aep sql

8 blast

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Compagen - A comparative genomics platform for early branching Metazoa | compagen.org Reviews

https://compagen.org

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 4th March, 2016 - New Transcriptome and Proteome for. They are available in the DataSets and Blast sections:. Reference: Hologenome analysis of two marine sponges with different microbiomes. Reference: Guzman, C&...

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compagen.org

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Compagen - A comparative genomics platform for early branching Metazoa

http://www.compagen.org/links.html

Links and External Resources. Genome browser (CIG - JGI). Genome browser provided by the Center of Integrative Genomics (UC Berkeley) and the DOE Joint Genome Institute. Genome browser - Joint Genome Institute (JGI). Genome assembly 1.0 constructed with the JGI assembler, Jazz, includes approximately 7.8X WGS in small insert end-sequence coverage. OIST Marine Genomics Unit - Genome Projects. Group of Professor Noriyuki Satoh provides genome browsers of. NCBI Sequence Read Archive (SRA).

2

Compagen - A comparative genomics platform for early branching Metazoa

http://www.compagen.org/about.html

Compagen is a project created and supported by the Prof. T.C.G. Bosch's workgroup. Into the Zoology Institute of the Christian-Albrechts-Universität. Workgroup of Prof. T.C.G. Bosch, Zoological Institute, University of Kiel, D-24118 Kiel, Germany.

3

Compagen - A comparative genomics platform for early branching Metazoa

http://www.compagen.org/haep_atlas.html

This tool allows you to compare expression of genes in ectodermal epithelia cells, endodermal epithelia cells and i-cells of a polyp. Expression data was obtained by FACS sorting of eGFP labelled cells followed by 454 sequencing. Numbers in the table represent the amount of raw reads per cluster. WT (wild type transcriptome). ECTO (ectodermal epithelial cells). ENDO (endodermal epithelial cells). Where the expression is:. Greater or equal ( = ). Less or equal (. For folds (e.g. 2.5 or 10).

4

Compagen - A comparative genomics platform for early branching Metazoa

http://www.compagen.org/datasets.html

To show the DataSets (multi-sequence fasta files) please select the specie from the list:. Please, select a specie. Hydra magnipapillata sf-1 (HMAGsf1). Hydra vulgaris AEP (HAEP). Oscarella sp. (Osp.). They will be listed here. The datasets have the following naming convention:. Date of construction in YYMMDD format. EST dataset from February 14, 2007.). Detailed explanation for the Species Code:. Detailed explanation for the DataSet type:. Whole genome shotgun (raw reads).

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AURELIA PROJECT

http://www.compagen.org/aurelia

Cnidarians have contributed greatly to our understanding of animal evolution, emergence of stem cell systems and innate immunity. Genomes of. Have been sequenced with that of. To appear in the near future. At the same time surprisingly little is known at the molecular level about scyphozoan and cubozoan jellyfishes which represent the highest level of morphological sophistication among cnidarians. These animals possess advanced sensory organs, exhibit complex behavioural traits and in contrast to. Follow...

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transgenic-hydra.org

www.transgenic-hydra.org

http://www.transgenic-hydra.org/links.htm

A synthetic RFP-gene for Hydra. A comparative genomics platform for basal metazoa.

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compagen.org

Compagen - A comparative genomics platform for early branching Metazoa

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 4th March, 2016 - New Transcriptome and Proteome for. They are available in the DataSets and Blast sections:. Reference: Hologenome analysis of two marine sponges with different microbiomes. Reference: Guzman, C&...

compagen.zoologie.uni-kiel.de

Compagen - A comparative genomics platform for early branching Metazoa

Compagen is a comparative genomics platform for early branching metazoan animals, maintained in the Bosch Laboratory at the University of Kiel. It stores various raw and processed sequence datasets along the evolutionary tree from sponges and cnidarians up to the tunicates and lower vertebrates. 9th April, 2015 - New DataSets for for. Transcripts and Protein translations). They are available in the DataSets and Blast sections:. 29th October, 2014 - New DataSets for for. Authors: Marcin Adamski-marcin&#46...

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