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ConCisE Scanner

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Select binding sites for search against genes :. Matrix Name And Description. V$AARE.01 - Amino acid response element, ATF4 binding site. V$AHR01 - Aryl hydrocarbon / dioxin receptor. V$AHRARNT.01 - Aryl hydrocarbon receptor / Arnt heterodimers. V$AHRARNT.02 - Aryl hydrocarbon / Arnt heterodimers, fixed core. V$VMAF.01 - v-Maf.

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ConCisE Scanner | concise-scanner.cchmc.org Reviews

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Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Select binding sites for search against genes :. Matrix Name And Description. V$AARE.01 - Amino acid response element, ATF4 binding site. V$AHR01 - Aryl hydrocarbon / dioxin receptor. V$AHRARNT.01 - Aryl hydrocarbon receptor / Arnt heterodimers. V$AHRARNT.02 - Aryl hydrocarbon / Arnt heterodimers, fixed core. V$VMAF.01 - v-Maf.

<META> KEYWORDS

1 concise scanner

2 genometrafac

3 disclaimer

4 specify search region

5 a enter basepairs

6 upstream

7 downstream

8 upstream and downstream

9 first exon

10 last exon

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ConCisE Scanner | concise-scanner.cchmc.org Reviews

https://concise-scanner.cchmc.org

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Select binding sites for search against genes :. Matrix Name And Description. V$AARE.01 - Amino acid response element, ATF4 binding site. V$AHR01 - Aryl hydrocarbon / dioxin receptor. V$AHRARNT.01 - Aryl hydrocarbon receptor / Arnt heterodimers. V$AHRARNT.02 - Aryl hydrocarbon / Arnt heterodimers, fixed core. V$VMAF.01 - v-Maf.

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ConCisE Scanner

https://concise-scanner.cchmc.org/concise-scanner/index.jsp;jsessionid=99A27FCE2CC39AF1D61842167A16CBBD

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Select binding sites for search against genes :. Matrix Name And Description. V$AARE.01 - Amino acid response element, ATF4 binding site. V$AHR01 - Aryl hydrocarbon / dioxin receptor. V$AHRARNT.01 - Aryl hydrocarbon receptor / Arnt heterodimers. V$AHRARNT.02 - Aryl hydrocarbon / Arnt heterodimers, fixed core. V$VMAF.01 - v-Maf.

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ConCisE Scanner

https://concise-scanner.cchmc.org/concise-scanner/ShowFamilyExtended

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. Specify search Terms and region. Form your own query. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Query on individual matrices. Select binding sites for search against genes :. AHR-arnt heterodimers and AHR-related factors. Autoimmune regulatory element binding factor. AP1, Activating protein 1. MAF and AP1 related factors. AP4 and related proteins. Brn POU domain factors.

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ConCisE Scanner

https://concise-scanner.cchmc.org/concise-scanner/Disclaimer.jsp;jsessionid=99A27FCE2CC39AF1D61842167A16CBBD

ConCisE Scanner uses binding site annotations obtained from Genomatix. Using their MatInspector software. Our web application is not meant to be a substitute for Genomatix and the services provided by them. For further details and annotations, please register at Genomatix. For a login account. Putative target analysis and annotation is done using the L2L Analysis Tool. Newman and Weiner, 2005). Which uses published gene expression data and Gene Ontology. Developed by the Division of BioMedical Informatics.

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genometrafac.cchmc.org

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/index.jsp;jsessionid=8132036BA6BF83505329D5D06D6D8756

A comparative genomics-based resource for initial characterization of gene models and. The identification of putative cis-regulatory regions of RefSeq Gene Orthologs. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using GenomeTrafac, please cite.

anil.cchmc.org

List of Projects | Anil Jegga

https://anil.cchmc.org/projects

To achieve my research goals, I use genomics (functional and comparative) and computational biology tools (bioinformatic approaches). Here's a list of our efforts - including past and current, and also those in pipeline. In-house developed and published online databases and servers. Http:/ trafac.cchmc.org. Http:/ info.cchmc.org/help/trafac/index.html. Jegga et al., 2002. Citing articles via Google Scholar. Http:/ cismols.cchmc.org. Http:/ info.cchmc.org/help/cismols/index.html. Jegga et al., 2005. Web-a...

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Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Select binding sites for search against genes :. Matrix Name And Description. V$AARE.01 - Amino acid response element, ATF4 binding site. V$AHR01 - Aryl hydrocarbon / dioxin receptor. V$AHRARNT.01 - Aryl hydrocarbon receptor / Arnt heterodimers. V$AHRARNT.02 - Aryl hydrocarbon / Arnt heterodimers, fixed core. V$VMAF.01 - v-Maf.

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