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COXPRESdb: Home

Last update: 2014.08.19. Entrez Gene ID (1717). Coexpression data of 9 species are updated. [ History. RNAseq-based coexpression data are available for human (Hsa3), mouse (Mmu2) and fly (Dme2). [ History. Coexpression data are updated with new 4 species. [ History. Okamura et al. (2015) COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. Raquo; Tutorial Movie. Example: [ gene page.

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COXPRESdb: Home | coxpresdb.jp Reviews
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Last update: 2014.08.19. Entrez Gene ID (1717). Coexpression data of 9 species are updated. [ History. RNAseq-based coexpression data are available for human (Hsa3), mouse (Mmu2) and fly (Dme2). [ History. Coexpression data are updated with new 4 species. [ History. Okamura et al. (2015) COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. Raquo; Tutorial Movie. Example: [ gene page.
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1 all words
2 keyword cholesterol
3 gene alias dhcr
4 149; edgeannotation
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6 149; networkdrawer
7 browse
8 bulk download
9 what's new
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COXPRESdb: Home | coxpresdb.jp Reviews

https://coxpresdb.jp

Last update: 2014.08.19. Entrez Gene ID (1717). Coexpression data of 9 species are updated. [ History. RNAseq-based coexpression data are available for human (Hsa3), mouse (Mmu2) and fly (Dme2). [ History. Coexpression data are updated with new 4 species. [ History. Okamura et al. (2015) COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. Raquo; Tutorial Movie. Example: [ gene page.

INTERNAL PAGES

coxpresdb.jp coxpresdb.jp
1

Browse | COXPRESdb

http://coxpresdb.jp/top_browsing.shtml

Entrez Gene ID (1717). COXPRESdb provides tissue-specific network for 49 tissues. (based on Hsa c2.0).

2

Publication | COXPRESdb

http://coxpresdb.jp/top_publication.shtml

Entrez Gene ID (1717). The official reference of COXPRESdb. Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T, Kinoshita K. COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Previous references of COXPRESdb. Obayashi T, Okamura Y, Ito S, Tadaka S, Motoike IN, Kinoshita K. COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. Obayashi T, Kinoshita K. Databa...

3

Overview | COXPRESdb

http://coxpresdb.jp/overview.shtml

Entrez Gene ID (1717). DNA microarray analysis produces information on relative expression levels for thousands of genes simultaneously. In addition, large collections of microarray data contain information about concerted changes in transcript levels in these datasets beyond the original purpose of each dataset. In the case of the right example, the two genes relatively strongly coexpress. The degree of coexpression is measured by pearson's correlation r = 0.7. Example of coexpression) Protein complex.

4

Statistics | COXPRESdb

http://coxpresdb.jp/top_statistics.shtml

Entrez Gene ID (1717). Last update; Mar. 02. 2015. Statistics of COXPRESdb ver. 6.0. GO score (E-4) *. Codon score (E-2) *. Reproducibility score (E-1) *. All coexpression data are downloadable. [ Link. Total (ver.5.0). Total (ver.4.1). Most of the gene networks in locus page include common KEGG pathways. Gene Ontology category page. Pages (ver.4.1). Genes with PPI data (ver.5). Genes with PPI data (ver.4.1). PPI data are derived from HPRD.

5

Help | COXPRESdb

http://coxpresdb.jp/help/movie

Entrez Gene ID (1717). Coexpressed gene list (Single query). Coexpressed gene network (Single query). Coexpressed gene network (Gene Ontology). The Basics Part 1. The Basics Part 2.

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bitnos.com bitnos.com

Bitnos - Gene Expression

http://www.bitnos.com/gene-expression

The Gene Expression Omnibus (GEO - NCBI) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO. Encyclopedia of DNA Elements. Category: Gene information search. Gene Sorter sho...

p4d-info.nig.ac.jp p4d-info.nig.ac.jp

VaProS | Home

http://p4d-info.nig.ac.jp/vapros

Query: gene/protein, ligand or phenotype name, UniProtKB ID/AC, EntrezGene ID, EMBL, Ensembl, Ensembl TRS, Ensembl PRO, OMIM ID, . Query: DNA/protein sequence (FASTA format). Space and numerical/control characters are automatically neglected. ID: EntrezGene ID, UniProtKB AC. How many times: (visit our site:VaProS). If you want to receive the latest information for such as VaProS). Thank you for your cooperation. Riation effect on PRO. VaProS, VAriation effect on PROtein Structure and function. A database...

sagace.nibiohn.go.jp sagace.nibiohn.go.jp

データベース一覧 | Sagace - 医薬基盤研究所統合検索データベース

http://sagace.nibiohn.go.jp/cgi-bin/sagace/dbViewer.cgi

ヒト, 動物 ヒト以外. CGED(Cancer Gene Expression Database). KNApSAcK (A Comprehensive Species-Metabolite Relationship Database). ヒト, 動物 ヒト以外 , 植物, 微生物. FLJ Human cDNA Database. ヒト, 動物 ヒト以外 , 植物, 微生物. KEGG ORTHOLOGY (Linking genomes to pathways by ortholog annotation). ヒト, 動物 ヒト以外. ヒト, 動物 ヒト以外 , 植物, 微生物. RAP-DB(Rice Annotation Project DataBase). ヒト, 動物 ヒト以外. 独立行政法人 医薬基盤研究所 創薬基盤研究部 トキシコゲノミクス インフォマティクスプロジェクト. 情報 システム研究機構 国立遺伝学研究所 系統生物研究センター 哺乳動物遺伝研究室. 文献 用語集 辞書, 学会 研究会. ヒト, 動物 ヒト以外. ヒト, 動物 ヒト以外 , 植物, 微生物. KEGG COMP...

atted.jp atted.jp

Overview | ATTED-II

http://atted.jp/overview.shtml

UniProtKB AC/ID (NAC1 ARATH). DNA microarray analysis produces information on relative expression levels for thousands of genes simultaneously. In addition, large collections of microarray data contain information about concerted changes in transcript levels in these datasets beyond the original purpose of each dataset. In the case of the right example, the two genes relatively strongly coexpress. The degree of coexpression is measured by pearson's correlation r = 0.7. For Arabidopsis Srinivasasainagendr...

hgc.jp hgc.jp

Databases | Human Genome Center

http://hgc.jp/english/database.html

JSNP database is a collection of approximately 200,000 gene-based SNP information that includes their location, methods to genotype them, their allele frequencies in Japanese general population. This project was one of the Prime Minister's National Millennium Projects in Japan, with the collaboration of Human Genome Center (HGC), Institute of Medical Science (IMS), The University of Tokyo, and Japan Science and Technology Agency (JST). Database of transcription factors and promoters of Bacillus subtilis.

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COXPRESdb: Home

Last update: 2012.08.29. Entrez Gene ID (1717). Coexpression data are updated with new 4 species. [ History. Example: [ gene page. Example: [ gene page. Example: [ gene page. Example: [ gene list. Example: [ gene list. Example: [ gene list. Example: [ gene list. Example: [ gene list. Example: [ gene list. Example: [ gene list. Example: [ gene list. COXPRESdb system has recovered. COXPRESdb will be shutdown for 1 hours. During that time, please use the mirror server [ Link.

coxpresdb.jp coxpresdb.jp

COXPRESdb: Home

Last update: 2014.08.19. Entrez Gene ID (1717). Coexpression data of 9 species are updated. [ History. RNAseq-based coexpression data are available for human (Hsa3), mouse (Mmu2) and fly (Dme2). [ History. Coexpression data are updated with new 4 species. [ History. Okamura et al. (2015) COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. Raquo; Tutorial Movie. Example: [ gene page.

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