cpr.stanford.edu

CPR: Calibrated Population Resistance Tool

Code Version 6.0 » ReleaseNotes. Nucleotide sequences can be entered in FASTA format or plain text. Sequences in FASTA format or plain text can be pasted in the text box (option A) or uploaded (option B). Using options A or B, it is possible to analyze up to 500 sequences at a time (character limit: 1,000,000). Example data sets: 75 sequences from Baker (2007). And 151 sequences from Dalai (2009). For analyzing sequences containing integrase, use the previous version, CPR V. 5.0. Terms of Use / FAQs.

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CPR: Calibrated Population Resistance Tool | cpr.stanford.edu Reviews

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Code Version 6.0 » ReleaseNotes. Nucleotide sequences can be entered in FASTA format or plain text. Sequences in FASTA format or plain text can be pasted in the text box (option A) or uploaded (option B). Using options A or B, it is possible to analyze up to 500 sequences at a time (character limit: 1,000,000). Example data sets: 75 sequences from Baker (2007). And 151 sequences from Dalai (2009). For analyzing sequences containing integrase, use the previous version, CPR V. 5.0. Terms of Use / FAQs.

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4 output analysis

5 drm list

6 team

7 people

8 publications

9 acknowledgements

10 news

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CPR: Calibrated Population Resistance Tool | cpr.stanford.edu Reviews

https://cpr.stanford.edu

Code Version 6.0 » ReleaseNotes. Nucleotide sequences can be entered in FASTA format or plain text. Sequences in FASTA format or plain text can be pasted in the text box (option A) or uploaded (option B). Using options A or B, it is possible to analyze up to 500 sequences at a time (character limit: 1,000,000). Example data sets: 75 sequences from Baker (2007). And 151 sequences from Dalai (2009). For analyzing sequences containing integrase, use the previous version, CPR V. 5.0. Terms of Use / FAQs.

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cpr.stanford.edu

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CPR: Calibrated Population Resistance Tool

http://cpr.stanford.edu/pages/releaseNotes.html

Surveillance drug-resistance mutation (SDRM) list. Sequence alignment and amino acid translation. Sequence and SDRM quality assessment. Proportions of sequences with SDRMs by drug class. Appendix 1: SDRM lists. Appendix 2: APOBEC3G/F hypermutations. Appendix 3: Highly unusual amino acid mutations. Appendix 4: Highly complex and rare mixtures. Appendix 5: Sequence and SDRM quality assessment criteria. CPR accepts a set of FASTA-formatted HIV-1 RT or protease (PR) gene nucleotide sequences as input sequenc...

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hivdb.stanford.edu

HIV Drug Resistance Database

http://hivdb.stanford.edu/index.html

Raquo; Analyze sequence sets for proportions with Surveillance Drug Resistance Mutations (SDRMs). Raquo; Interactive map. Displaying HIV-1 drug resistance in ARV-naive populations. Raquo; XML Suite of Treatment-Change Episodes. Collaboration with Africa Centre for Health and Population Studies and South African MRC. Mutation frequencies by genotype and treatment. Interactive map displaying HIV-1 drug resistance in ARV-naive population. Retrieve sequences and treatments from viruses with specific mutations.

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CPR: Calibrated Population Resistance Tool

Code Version 6.0 » ReleaseNotes. Nucleotide sequences can be entered in FASTA format or plain text. Sequences in FASTA format or plain text can be pasted in the text box (option A) or uploaded (option B). Using options A or B, it is possible to analyze up to 500 sequences at a time (character limit: 1,000,000). Example data sets: 75 sequences from Baker (2007). And 151 sequences from Dalai (2009). For analyzing sequences containing integrase, use the previous version, CPR V. 5.0. Terms of Use / FAQs.

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