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Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.
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CressExpress Home Page | cressexpress.org Reviews

https://cressexpress.org

Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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CressExpress Home Page

Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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coxpresdb.jp coxpresdb.jp

Overview | COXPRESdb

http://coxpresdb.jp/overview.shtml

Entrez Gene ID (1717). DNA microarray analysis produces information on relative expression levels for thousands of genes simultaneously. In addition, large collections of microarray data contain information about concerted changes in transcript levels in these datasets beyond the original purpose of each dataset. In the case of the right example, the two genes relatively strongly coexpress. The degree of coexpression is measured by pearson's correlation r = 0.7. Example of coexpression) Protein complex.

lorainelab.org lorainelab.org

Co-expression analysis | Loraine Lab

http://lorainelab.org/gallery/co-expression-analysis-in-plants

Bioinformatics, genomics and software. Skip to primary content. Lab Assistant for Genome Biotechnology Class. Writing, data, and other fun stuff. Resources for people in the lab. Statistics and R for the Life Sciences. The power of this approach has motivated many groups to build Web sites that offer interactive tools for exploring co-expression relationships between genes. Co-expression tools are available for many plants, including Arabidopsis, rice, corn, and others. A web-based co-expression analysis...

araport.org araport.org

External Resources | Araport

https://www.araport.org/community/links

Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. A collection of useful sites containing information and resources pertaining to. Home page for sequencing 1001 Arabidopsis genomes. Arabidopsis Biological Resource Center. Arabidopsis Gene Regulatory Information Server (includes transcription factors, promoters and TF-promoter interactions). A curated knowledgebase of plant biological pathways. Arabidopsis component of the Plant Metabolic Pathway Databases. Browse pri-miRNA expres...

atted.jp atted.jp

Overview | ATTED-II

http://atted.jp/overview.shtml

UniProtKB AC/ID (NAC1 ARATH). DNA microarray analysis produces information on relative expression levels for thousands of genes simultaneously. In addition, large collections of microarray data contain information about concerted changes in transcript levels in these datasets beyond the original purpose of each dataset. In the case of the right example, the two genes relatively strongly coexpress. The degree of coexpression is measured by pearson's correlation r = 0.7. For Arabidopsis Srinivasasainagendr...

lorainelab.org lorainelab.org

Software we develop | Loraine Lab

http://lorainelab.org/software

Bioinformatics, genomics and software. Skip to primary content. Lab Assistant for Genome Biotechnology Class. Writing, data, and other fun stuff. Resources for people in the lab. Statistics and R for the Life Sciences. We develop tools for bioinformatics research, including Web sites, desktop tools, and databases. Most of our software is open source. To see what we’re working on, visit our publicly-accessible repositories on BitBucket.org. Integrated Genome Browser (IGB). Download IGB from Bioviz.org.

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CressExpress Home Page

Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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