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Sustainable infrastructure for biomedical research — CTMM TraIT

Data Integration and Analysis. Deployment and User Support. Sustainable infrastructure for biomedical research. The CTMM Translational Research IT (TraIT) project is developing and implementing a long-lasting IT infrastructure for translational research projects in the Netherlands that will facilitate the collection, storage, analysis, and archiving of data generated in the biomedical research projects. A poster with more information over TraIT can be downloaded here. LOGIS, new tool in CTMM-TraIT suite.

http://www.ctmm-trait.nl/

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Sustainable infrastructure for biomedical research — CTMM TraIT | ctmm-trait.nl Reviews
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Data Integration and Analysis. Deployment and User Support. Sustainable infrastructure for biomedical research. The CTMM Translational Research IT (TraIT) project is developing and implementing a long-lasting IT infrastructure for translational research projects in the Netherlands that will facilitate the collection, storage, analysis, and archiving of data generated in the biomedical research projects. A poster with more information over TraIT can be downloaded here. LOGIS, new tool in CTMM-TraIT suite.
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Sustainable infrastructure for biomedical research — CTMM TraIT | ctmm-trait.nl Reviews

https://ctmm-trait.nl

Data Integration and Analysis. Deployment and User Support. Sustainable infrastructure for biomedical research. The CTMM Translational Research IT (TraIT) project is developing and implementing a long-lasting IT infrastructure for translational research projects in the Netherlands that will facilitate the collection, storage, analysis, and archiving of data generated in the biomedical research projects. A poster with more information over TraIT can be downloaded here. LOGIS, new tool in CTMM-TraIT suite.

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tepis.ctmm-trait.nl tepis.ctmm-trait.nl

Philips Digital Pathology

galaxy.ctmm-trait.nl galaxy.ctmm-trait.nl

CTMM-TraIT Galaxy

Welcome to the CTMM-TraIT Galaxy Portal. This portal is supported by the CTMM TraIT. The TraIT project focuses on the integration and querying of information across the four major domains of CTMM's translational research - clinical data, imaging data, biobanking and genomics/proteomics data. Much of the development will be performed in collaboration with groups at the global and European level. Researchers collaborating with CTMM-TraIT can make use of the CTMM-TraIT Galaxy environment.

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Galaxy / CTMM-TraIT Demo Galaxy

Search did not match any tools.

phenotypedb.ctmm-trait.nl phenotypedb.ctmm-trait.nl

Phenotype Database

Create a new study. The Phenotype Database is an application that can store any biological study. It contains templates which makes it possible to customize. In order to allow flexibility to capture all information you require within a study, and to make it possible to compare studies or study data, the system uses customizable templates and ontologies. It is especially designed to store complex study designs including. Read more. Menu you can either create. Quick Start User Guide. In Depth User Guide.

INTERNAL PAGES

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1

TraIT

http://www.ctmm-trait.nl/trait-tools/workflow

Workflow Tool to Monitor Bio-specimen Exchange. Direct access to the Workflow. Developed as a cloud based solution to monitor requesting, dispatching, collecting and processing bio-specimens plus providing audit trails of all involved. Privacy requirements, time constraints as well as legal permissions are documented and where needed exchanged. Basic design is based on the String of Pearls Institute (PSI) biobanking protocols and SOP’s following their formulated rules and recommendations.

2

TraIT

http://www.ctmm-trait.nl/work-packages/work-package-3-biobanking

Objective: Establish a common standard for biobanking summary data, create catalog solution for biospecimen data and develop a generic workflow for biospecimen request and ordering. The Biobanking work package in TraIT aims to provide scientist with tools and services that address ICT challenges around collecting, storing, exchanging, combining and analyzing bio-specimens as well as their related data. Turnkey solutions that help scientist to focus on their core business: Research. A number of use cases ...

3

TraIT

http://www.ctmm-trait.nl/work-packages/work-package-5-data-integration-analysis

Data Integration and Analysis. Data Integration and Analysis. Objective: Establish a translational research platform for cross-domain data integration, data storage and data analysis. TraIT Data Integration and Analysis has built an environment that acts as a data warehouse and offers an extensive collection of data analytics. Data generated by the various biomedical translational studies, which is captured, stored and processed in data domain-specific tools and applications, will seamlessly integrat...

4

TraIT

http://www.ctmm-trait.nl/trait-tools/OpenClinica

OpenClinica is a TraIT managed tool that allows sponsors (or their delegates) to design and manage study specific electronic CRFs. Steps to get a study up and running in OpenClinica. OpenClinica is a TraIT managed tool that allows sponsors (or their delegates) to design and manage study specific electronic CRFs. OpenClinica CRFs can be completed for all participating subjects and can be reached from various locations in the world, allowing OpenClinica to be used for multi center studies. The company whic...

5

TraIT

http://www.ctmm-trait.nl/sitemap

An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. BMIA Tools and Services. BMIA Security and Privacy. Data Integration and Analysis. Deployment and User Support. Setting up Phenotype Database. Steps to start using TraIT tools. Patching acceptation servers TraIT. Patching production servers TraIT 09-04-2015. 2nd firewall software upgrade 18-4-2015. XNAT production upgrade planned 16 april. Onderhoud noodstroom 13 juni. Successf...

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CERR_Radiomics Collection | CancerData.org

https://www.cancerdata.org/CERR_Radiomics

Skip to main content. Sharing data for cancer research. EuroCAT Umbrella Protocol for NSCLC. Advanced MR Imaging Protocol for Glioblastoma. Standard Follow Up Program For Head And Neck Cancer Patients. Persistent Identifiers with DOI. Radiation Oncology Ontology - ROO. The CERR Radiomics collection is a collection of CT and PET-CT scans that can be used to aid in the implementation of Radiomics for CERR, the Computational Environment for Radiotherapy Research.

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Data | CancerData.org

https://www.cancerdata.org/data

Skip to main content. Sharing data for cancer research. EuroCAT Umbrella Protocol for NSCLC. Advanced MR Imaging Protocol for Glioblastoma. Standard Follow Up Program For Head And Neck Cancer Patients. Persistent Identifiers with DOI. Radiation Oncology Ontology - ROO. To facilitate the collaborative efforts in cancer treatment and research, the. CancerData medical data archive. To see a description of the available collections, click here. To go to the images, click here.

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Internships – Systems Bioinformatics group

http://www.teusinkbruggemanlab.nl/teaching/internships

Modelling methods and tools. Modelling methods and tools. Flux variant analysis to find a potential source for lactate in cancers. Theoretical (Bachelor or Master). In collaboration with Brett Olivier. Techniques: modelling, flux variant analysis. The switch to fermentative metabolism in. Theoretical (Bachelor or Master). Is a helminth that causes schistosomiasis in humans. It is one of the so-called neglected tropical diseases. Encounter high glucose concentrations. When subjected to high glucose,.

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Preclinical evaluation and validation of [18F]HX4, a promising hypoxia marker for PET imaging | CancerData.org

https://www.cancerdata.org/10.1073/pnas.1102526108

Skip to main content. Sharing data for cancer research. EuroCAT Umbrella Protocol for NSCLC. Advanced MR Imaging Protocol for Glioblastoma. Standard Follow Up Program For Head And Neck Cancer Patients. Persistent Identifiers with DOI. Radiation Oncology Ontology - ROO. Preclinical evaluation and validation of [18F]HX4, a promising hypoxia marker for PET imaging. Preclinical evaluation and validation of [18F]HX4, a promising hypoxia marker for PET imaging. Download the images using these instructions.

cancerdata.org cancerdata.org

Recent posts for No user | CancerData.org

https://www.cancerdata.org/protocols/eurocat-umbrella-protocol-nsclc

Skip to main content. Sharing data for cancer research. EuroCAT Umbrella Protocol for NSCLC. Advanced MR Imaging Protocol for Glioblastoma. Standard Follow Up Program For Head And Neck Cancer Patients. Persistent Identifiers with DOI. Radiation Oncology Ontology - ROO. Recent posts for No user. Recent posts for No user. Please add your name. Please add your affiliation. Please add your e-mail address so we can notify you of updated protocols.

cancerdata.org cancerdata.org

Biblio | CancerData.org

https://www.cancerdata.org/biblio

Skip to main content. Sharing data for cancer research. EuroCAT Umbrella Protocol for NSCLC. Advanced MR Imaging Protocol for Glioblastoma. Standard Follow Up Program For Head And Neck Cancer Patients. Persistent Identifiers with DOI. Radiation Oncology Ontology - ROO. Show only items where. Aerts, Hugo J W L. Aerts, Hugo J. W. L. Ahn, Peter H. Boutros, Paul C. Brakenhoff, Ruud H. Chu, Kenneth C. De Ruysscher, Dirk. De Ruysscher, Dirk. Deasy, Joseph O. Dingemans, Anne-Marie C. Dingemans, Anne-Marie C.

cancerdata.org cancerdata.org

Externally validated HPV-based prognostic nomogram for oropharyngeal carcinoma patients yields more accurate predictions than TNM staging | CancerData.org

https://www.cancerdata.org/10.1016/j.radonc.2014.09.005

Skip to main content. Sharing data for cancer research. EuroCAT Umbrella Protocol for NSCLC. Advanced MR Imaging Protocol for Glioblastoma. Standard Follow Up Program For Head And Neck Cancer Patients. Persistent Identifiers with DOI. Radiation Oncology Ontology - ROO. Externally validated HPV-based prognostic nomogram for oropharyngeal carcinoma patients yields more accurate predictions than TNM staging. 101016/j.radonc.2014.09.005. We analyzed the association between clinico-pathological factors and ov...

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Research support | Durrer Center for Cardiovascular Research

http://www.durrercenter.nl/hallo-wereld

On jul 2, 2013 in slider. Molecular biology, bio-informatics. Info@durrercenter.nl &#169 2013, Durrer Center for Cardiovascular Research.

durrercenter.nl durrercenter.nl

Logistics | Durrer Center for Cardiovascular Research

http://www.durrercenter.nl/bericht-2

On jul 3, 2013 in slider. Infrastructure for collecting and distributing samples. Info@durrercenter.nl &#169 2013, Durrer Center for Cardiovascular Research.

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Sustainable infrastructure for biomedical research — CTMM TraIT

Data Integration and Analysis. Deployment and User Support. Sustainable infrastructure for biomedical research. The CTMM Translational Research IT (TraIT) project is developing and implementing a long-lasting IT infrastructure for translational research projects in the Netherlands that will facilitate the collection, storage, analysis, and archiving of data generated in the biomedical research projects. A poster with more information over TraIT can be downloaded here. LOGIS, new tool in CTMM-TraIT suite.

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