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For bugs and general help:. Contact the Cyber-T Helpdesk: cybert[at]ics.uci.edu Subject=CyberT. Contact IGB Licenses: igb-license[at]ics.uci.edu Subject=CyberT. Cyber-T: Differential analysis of high-throughput data. Cyber-T provides differential analysis tools for high-throughput data. The system handles many types of data, from DNA and Protein microarrays, to Next Generation Sequencing, to Quantitative Mass Spectrometry. Unpaired Two Conditions Data. Standard t-test and Bayes-regularized t-test). Baldi...

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CyberT Webserver | cybert.ics.uci.edu Reviews

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For bugs and general help:. Contact the Cyber-T Helpdesk: cybert[at]ics.uci.edu Subject=CyberT. Contact IGB Licenses: igb-license[at]ics.uci.edu Subject=CyberT. Cyber-T: Differential analysis of high-throughput data. Cyber-T provides differential analysis tools for high-throughput data. The system handles many types of data, from DNA and Protein microarrays, to Next Generation Sequencing, to Quantitative Mass Spectrometry. Unpaired Two Conditions Data. Standard t-test and Bayes-regularized t-test). Baldi...

<META> KEYWORDS

1 for commercial licenses

2 current maintainer

3 matthew kayala

4 welcome to cyber t

5 getting started

6 multiple conditions data

7 downloads

8 r source code

9 example datasets

10 citing cyber t

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CyberT Webserver | cybert.ics.uci.edu Reviews

https://cybert.ics.uci.edu

For bugs and general help:. Contact the Cyber-T Helpdesk: cybert[at]ics.uci.edu Subject=CyberT. Contact IGB Licenses: igb-license[at]ics.uci.edu Subject=CyberT. Cyber-T: Differential analysis of high-throughput data. Cyber-T provides differential analysis tools for high-throughput data. The system handles many types of data, from DNA and Protein microarrays, to Next Generation Sequencing, to Quantitative Mass Spectrometry. Unpaired Two Conditions Data. Standard t-test and Bayes-regularized t-test). Baldi...

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cybert.ics.uci.edu

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CyberT Webserver

http://cybert.ics.uci.edu/datasets

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Here are some example datasets that could be used with Cyber-T. Click on the links to bring you to the relevant analysis pages with all the parameters filled in. Unpaired Two Conditions Datasets. These are all control vs. experiment data sets. Analyze one! DNA Microarray Control Experimental Data. Basic file input parameters. Number of label columns: 1. Number of first condition columns: 4.

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CyberT Webserver

http://cybert.ics.uci.edu/help

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Downloading and installing Cyber-T / bayesreg.R (R code). Using the bayesreg.R code in R. Input data file format. Meanings of input parameters. General questions, common errors and troubleshooting. The Cyber-T Bayesian statistical framework was developed by Pierre Baldi. And first implemented in collaboration with Tony Long. In addition to DNA microarray analysis [ 6-8. Downloading/Installing...

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CyberT Webserver

http://cybert.ics.uci.edu/controlexp

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Unpaired Two-Conditions Data Analysis. Use one of the datasets and parameter settings below to understand how to run Cyber-T:. DNA Microarray Control Experimental Data. Quantitative Mass Spec Control Experimental Data. Complete P. falciparum Protein Microarray Data. Low-replicate P. falciparum Protein Microarray Data. Example RNA-Seq ENCODE Dataset. Delete rows with no label.

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CyberT Webserver

http://cybert.ics.uci.edu/download

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. The source code is free for academic use. All fields on this form are optional. Cyber-T and/or the hdarray library (including hdarray, bayesreg.R) is free for academic, non-commercial, research use. Only The appropriate references [1,2]. Should be cited when used for academic/research purposes. For commercial licenses, please contact IGB Licenses. University of California, Irvine.

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CyberT Webserver

http://cybert.ics.uci.edu/pair

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Paired Two-Conditions Data Analysis. Use one of the datasets and parameter settings below to understand how to run Cyber-T:. DNA Microarray Paired Data Raw Measures. Delete rows with no label. Number of label columns. Number of columns per condition. Blank or 0 gives non-Bayes regularized tests. Information about paired analyses. Posterior Probability of Differential Expression.

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Matthew A. Kayala @ IGB :: ICS :: UCI

http://www.ics.uci.edu/~mkayala

Matthew A. Kayala. Matt [dot] kayala [at] gmail [dot] com. Westborough, MA 01581. I recently finished my PhD in Computer Science under Pierre Baldi. At the University of California, Irvine. In the Bren School of Information and Computer Sciences. I am associated with the Institute for Genomics and Bioinformatics. My full CV can be found here. Prediction of chemical reactivity. Differential analysis of high-throughput data. A common task in the analysis of data generated by high-throughput biological tech...

dmaf.biochem.uci.edu

Data Analysis FAQs | GHTF

http://dmaf.biochem.uci.edu/content/sequence-analysis-faqs

Genomics High Throughput Facility Staff. CFCCC Bioinformatics and Statistical Analysis. Directions to UC Irvine. UC Irvine Campus Map. Illumina HT DNA sequencing equipment. CBot Cluster Generation System. Covaris S2 Focused Acoustic Shearer. Array Automation's ArrayPlex - Automated/Robotic Instrumentation. Affymetrix Guidelines and Sample Preparation. Chao Family Comprehensive Cancer Center. What software do I need to align illumina reads to reference sequences in my own lab? 2 (all available on HPC.

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