cybert.microarray.ics.uci.edu

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For bugs and general help:. Contact the Cyber-T Helpdesk: cybert[at]ics.uci.edu Subject=CyberT. Contact IGB Licenses: igb-license[at]ics.uci.edu Subject=CyberT. Cyber-T: Differential analysis of high-throughput data. Cyber-T provides differential analysis tools for high-throughput data. The system handles many types of data, from DNA and Protein microarrays, to Next Generation Sequencing, to Quantitative Mass Spectrometry. Unpaired Two Conditions Data. Standard t-test and Bayes-regularized t-test). Baldi...

<META> KEYWORDS

1 for commercial licenses

2 current maintainer

3 matthew kayala

4 welcome to cyber t

5 getting started

6 multiple conditions data

7 downloads

8 r source code

9 example datasets

10 citing cyber t

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CyberT Webserver | cybert.microarray.ics.uci.edu Reviews

https://cybert.microarray.ics.uci.edu

For bugs and general help:. Contact the Cyber-T Helpdesk: cybert[at]ics.uci.edu Subject=CyberT. Contact IGB Licenses: igb-license[at]ics.uci.edu Subject=CyberT. Cyber-T: Differential analysis of high-throughput data. Cyber-T provides differential analysis tools for high-throughput data. The system handles many types of data, from DNA and Protein microarrays, to Next Generation Sequencing, to Quantitative Mass Spectrometry. Unpaired Two Conditions Data. Standard t-test and Bayes-regularized t-test). Baldi...

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cybert.microarray.ics.uci.edu

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CyberT Webserver

http://cybert.microarray.ics.uci.edu/anova

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Multiple Conditions Data Analysis. Use one of the datasets and parameter settings below to understand how to run Cyber-T:. DNA Microarray ANOVA Data. Protein Array ANOVA Data. Delete rows with no label. Number of label columns. Data columns for each condition. Separated by spaces (e.g. '3 3 3' but without quotes). Do nothing for low values. Set values less than. Compute pairwise post-hoc tests.

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http://cybert.microarray.ics.uci.edu/download

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. The source code is free for academic use. All fields on this form are optional. Cyber-T and/or the hdarray library (including hdarray, bayesreg.R) is free for academic, non-commercial, research use. Only The appropriate references [1,2]. Should be cited when used for academic/research purposes. For commercial licenses, please contact IGB Licenses. University of California, Irvine.

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http://cybert.microarray.ics.uci.edu/help

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Downloading and installing Cyber-T / bayesreg.R (R code). Using the bayesreg.R code in R. Input data file format. Meanings of input parameters. General questions, common errors and troubleshooting. The Cyber-T Bayesian statistical framework was developed by Pierre Baldi. And first implemented in collaboration with Tony Long. In addition to DNA microarray analysis [ 6-8. Downloading/Installing...

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http://cybert.microarray.ics.uci.edu/pair

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Paired Two-Conditions Data Analysis. Use one of the datasets and parameter settings below to understand how to run Cyber-T:. DNA Microarray Paired Data Raw Measures. Delete rows with no label. Number of label columns. Number of columns per condition. Blank or 0 gives non-Bayes regularized tests. Information about paired analyses. Posterior Probability of Differential Expression.

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http://cybert.microarray.ics.uci.edu/datasets

For bugs and general help:. Contact the Cyber-T Helpdesk. Cyber-T: Differential analysis of high-throughput data. Here are some example datasets that could be used with Cyber-T. Click on the links to bring you to the relevant analysis pages with all the parameters filled in. Unpaired Two Conditions Datasets. These are all control vs. experiment data sets. Analyze one! DNA Microarray Control Experimental Data. Basic file input parameters. Number of label columns: 1. Number of first condition columns: 4.

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