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Sheffield lab: computational biology at the University of VirginiaDatabio.org is the home of a computational biology research group led by Nathan Sheffield at the University of Virginia
http://www.databio.org/
Databio.org is the home of a computational biology research group led by Nathan Sheffield at the University of Virginia
http://www.databio.org/
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Sheffield lab: computational biology at the University of Virginia | databio.org Reviews
https://databio.org
Databio.org is the home of a computational biology research group led by Nathan Sheffield at the University of Virginia
Regulatory Elements Database
This database provides a user interface to the results of Sheffield et al. (2013). The data is from hundreds of DNaseI-hypersensitivity and Affymetrix microarray experiments. On this web interface you can find:. Normalized DNaseI-hypersensitivity profiles for 112 human samples for 2.8 million individual regulatory elements. Normalized Affymetrix gene expression profiles for 112 human samples for about 30,000 Ensembl genes. Motif analysis results for enriched DNA motifs in regulatory clusters. MyoD1 regul...
databio.org
Join
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Are you interested in doing research at the exciting interface of computation and biology? Do you want to work with large biomedical datasets to make a difference in basic science and in human health? A computational biology research group led by Nathan Sheffield. In the Center for Public Health Genomics. Is recruiting individuals with an interest in team-oriented computational biology. Databio.org is the home of a computational biology research group led by Nathan Sheffield. At the University of Virginia.
Efficient parallel processing in python with Tabix and MapReduce
http://databio.org/posts/tabix_files.html
Efficient parallel processing in python with Tabix and MapReduce. Feb 4, 2016 by Nathan Sheffield. If you want to do parallel processing on big genomics data in python, you have to have a way to feed each process just a subset of the data. If you just load a bunch of data (say, a BED file) into memory and then try to split your process out to multiple processors, you will duplicate all that data for every process whoops! Can’t do that for a big file. But what if your data aren’t in a BAM file? Create a h...
Slides
http://databio.org/slides
These are modular web-based presentations. Built using Reveal.js. Brief introduction to research in the group. Epigenomics and cancer heterogeneity in Ewing sarcoma. Exploring DNA methylation data in a rare pediatric cancer. Using Docker Bioconductor containers for portable, sharable, and reproducible R analysis and package development. 2015 European Bioconductor Developers Meeting, Cambridge, UK. A guide to building, using, modifying, and sharing R environments based on Bioconductor Docker containers.
People
http://databio.org/people
PhD Computational Biology and Bioinformatics. Vienna, and Stanford University. Now at UNC), Greg Crawford. And Imperial). After my PhD, I was an HFSP. Postdoctoral Fellow in Christoph Bock’s Lab. At the Center for Molecular Medicine. Vienna, with the return phase of my fellowship in Howard Chang’s Lab. I’ve been lucky to work with lots of other great collaborators. I also have a passion for scientific writing, and am the author of this Scientific Writing web resource. At the University of Virginia.
Nathan Sheffield CV
http://databio.org/nathan_sheffield
Assistant Professor, University of Virginia. Depts of Public Health Sciences and Biomedical Engineering. HFSP Postdoc, Computational Epigenomics,. Center for Molecular Medicine, Vienna. Center for Personal Dynamic Regulomes, Stanford University. PhD Computational Biology and Bioinformatics. Databio.org is the home of a computational biology research group led by Nathan Sheffield. At the University of Virginia.
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Regulatory Elements Database
http://db.databio.org/index.php
This database provides a user interface to the results of Sheffield et al. (2013). The data is from hundreds of DNaseI-hypersensitivity and Affymetrix microarray experiments. On this web interface you can find:. Normalized DNaseI-hypersensitivity profiles for 112 human samples for 2.8 million individual regulatory elements. Normalized Affymetrix gene expression profiles for 112 human samples for about 30,000 Ensembl genes. Motif analysis results for enriched DNA motifs in regulatory clusters. MyoD1 regul...
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Profil & Biografi Andik Vermansyah, Pesepakbola Berbakat Indonesia. Profil and Biografi Andik Vermansyah, Pesepakbola Berbakat Indonesia – Andik Firmansyah adalah seorang atlet pesepak bola muda Indonesia. Karena kepiawaiannya dalam menggocek si kulit bundar, ia seringkali mendapat sebutan Lionel. Jan 4, 2017. Profil & Biografi Yusril Ihza Mahendra Lengkap. Jan 2, 2017. Profil & Biografi Taufik Hidayat, Tunggal Putra Penuh Prestasi. Dec 21, 2016. Dec 14, 2016. Dec 8, 2016. Biografi Sigmund Freud, Pendiri...
Sheffield lab: computational biology at the University of Virginia
Welcome to the Sheffield lab! We are a computational biology research group located in the Center for Public Health Genomics. We are affiliated with the Departments of Biomedical Engineering. And Public Health Sciences. As well as the Data Science Institute. And the Child Health Research Center. Looking for a neat place to do research? 1300 Jefferson Park Ave. Charlottesville, VA 22908. Lab space: 6131 MSB (6th floor). Dec 16, 2016. Jul 18, 2016. Open software and data freedom. Feb 4, 2016.
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Tokoh Ilmuwan Penemu Dunia. Priyanka Chopra - Aktris India dan Miss World. Priyanka Chopra (bahasa Hindi: प्रियंका चोपड़ा, diucapkan [prɪˈjəŋkaː ˈtʃoːpɽaː]; lahir 18 Juli 1982) adalah seorang aktris India dan mantan. Profil Gus Nuril Arifin Husein Da'i Lintas Agama. KH Nuril Arifin Husein, namun beliau akrab dipanggil Gus Nuril. Lelaki kelahiraan asal Ujungpangkah. Roy Marten - Aktor Senior Indonesia tahun 70-an. Komedian Eko Patrio - Eko Hendro Purnomo. Mar'ie Muhammad - Mantan Menteri Keuangan. Image: ...
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