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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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UWEncode - Home | dhsmap.org Reviews

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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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UWEncode - Home | dhsmap.org Reviews

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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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UWEncode - Publications

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J Bioinform Comput Biol. Proc Natl Acad Sci USA. An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Developmental fate and cellular maturity encoded in human regulatory DNA landscapes. DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions. Proc Natl Acad Sci USA. Widespread plasticit...

2

UWEncode - Data_releases

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April 27, 2013. April 27, 2013. April 27, 2013. April 27, 2013. April 17, 2013. April 17, 2013. April 17, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 12, 2013. April 9, 2013. ZNF knockout 4C50 C4. April 9, 2013. ZNF knockout A4.1-C6. April 9, 2013. ZNF knockout F4.1-B2. April 9, 2013. April 9, 2013. April 9, 2013. April 6, 2013. April 6, 2013. April 6, 2013. April 6, 2013. April 6, 2013. Sept 1...

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UWEncode - About: Goals

http://www.dhsmap.org/about

The overall aim of the UW ENCODE Project is to create comprehensive, high-quality catalogues of human and mouse DNasel hypersensitive sites (DHSs) spanning all major tissue lineages and key developmental time points. A key focus of our production effort is on data quality, a strategy that served the Human Genome Project well. Accordingly, samples are rigorously screened in a pipeline fashion, with only a select set advancing to whole-genome data collection. Collectively, we aim to establish a high-qualit...

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UWEncode - Software: Bedops

http://www.dhsmap.org/software

The utilities in the BEDOPS software suite help to address common questions raised during genomics studies, mostly with regard to overlap and proximity relationships between data sets. A prominent advantage of the utilities over related software is scalability: the tools are designed to work with arbitrarily large data in a relaxed BED format. You can download code and binaries at the bedops GitHub site. You can also discuss the BEDOPS suite at our users forum. The utilities in the suite are:. The conver...

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UWEncode - Sitemap

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UWEncode - Home

University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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