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Pollard Lab – Gladstone Institutes, UC San Francisco

Gladstone Institutes | UCSF

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Katherine Pollard

1650●●●●s St

San ●●●●isco , CA, 94158

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kp●●●●●●@gladstone.ucsf.edu

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Katherine Pollard

1650●●●●s St

San ●●●●isco , CA, 94158

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1.41●●●●2711
kp●●●●●●@gladstone.ucsf.edu

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Pollard Lab – Gladstone Institutes, UC San Francisco | docpollard.org Reviews
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Gladstone Institutes | UCSF
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skip to content,pollard lab,menu,people,research,publications,resources,software,data,teaching,bmi206 statistical methods,latest news,and press release,postdoc geoff fudenberg,more news…,meet the team,read our papers,browse our projects,explore our tools
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Pollard Lab – Gladstone Institutes, UC San Francisco | docpollard.org Reviews

https://docpollard.org

Gladstone Institutes | UCSF

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MetaQuery

MetaQuery: quantitative analysis of the human gut microbiome. MetaQuery is a web application for rapid annotation and quantitative analysis of specific genes, functions, and taxa across 2,000 publicly available human gut metagenomes. Learn More. Select a search mode:. Click buttons to show/hide forms. Examples: Bacteroides vulgatus 16S. Fill out the form below and click submit:. DNA or Protein Sequence(s):. One or more protein sequences in FASTA format. Maximum of 100 sequences per submission. Target Ali...

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Katherine Pollard's Research Group -- Gladstone Institutes, UCSF

http://docpollard.org/index.html

Gladstone Institutes, UC San Francisco. We develop and apply. Regions of the primate. Alex Pico, Anders Riutta, and collaborators modernized WikiPathways. And linked it to other biological knowledge bases using semantic web and ontology approaches. Read the press release. Our work on Human Accelerated Regions was featured in a Live Science. Article about "Prehistoric X-Men". The White House Office of Science and Technology Policy announces the National Microbiome Initiative. Katie Pollard, Nevan Krogan.

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Katherine Pollard's Research Group -- Gladstone Institutes, UCSF

http://docpollard.org/jobs.html

Gladstone Institutes, UC San Francisco. If you are interested in being a graduate student in the lab, you should first enroll in a UCSF graduate program, such as Bioinformatics. Graduate students take a year of classes and do rotation projects in several labs before choosing an advisor. Individuals cannot be admitted directly into a UCSF/Gladstone lab.

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Samantha Riesenfeld

http://docpollard.org/sriesenfeld/index.html

Samantha J. Riesenfeld. I am now a postdoctoral researcher in the Regev lab. At the Broad Institute. Please visit my new home page. Adapted from template design by Andreas Viklund.

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Tony Capra's Webpage -- John Capra's Webpage at UCSF

http://docpollard.org/tonyc/index.html

Tony Capra (aka John Capra). I have started my own group as an assistant professor in the Center for Human Genetics Research. And Department of Biomedical Informatics. Please visit the new Capra Lab website.

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Human Accceleration in Mammal Conserved Elements

http://docpollard.org/2x/2xHARs.html

Katherine Pollard's Research Group - Gladstone Institutes, UCSF. University of California, San Francisco. Human Accceleration in Mammal Conserved Elements. 31-species multiz alignments,. PhastCons elements using only mammals with hg18 excluded,. Macaque, dog and mouse synteny (level 1 or 2, non-gap),. No segmental duplications,. 1,322,576 elements,. PhyloP likelihood ratio tests (LRT), score=-log p-value truncated at 20,. Benjamini-Hochberg false discovery rate (FDR) adjustment. File, shown below). WDR7,...

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MetaQuery

http://www.metaquery.docpollard.org/index.html

MetaQuery: quantitative analysis of the human gut microbiome. MetaQuery is a web application for rapid annotation and quantitative analysis of specific genes, functions, and taxa across 2,000 publicly available human gut metagenomes. Learn More. Select a search mode:. Click buttons to show/hide forms. Examples: Bacteroides vulgatus 16S. Fill out the form below and click submit:. DNA or Protein Sequence(s):. One or more protein sequences in FASTA format. Maximum of 100 sequences per submission. Target Ali...

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MetaQuery

http://www.metaquery.docpollard.org/downloads.html

MetaQuery: quantitative analysis of the human gut microbiome. Source code, databases, taxonomic annotations, and average genome size estimates.

metaquery.docpollard.org metaquery.docpollard.org

MetaQuery

http://www.metaquery.docpollard.org/faq.html

MetaQuery: quantitative analysis of the human gut microbiome. How can I query the abundance of a specific organism, rather than a specific gene? What are the best alignment parameters to use? What does "average copy number" mean, and how does MetaQuery estimate this? Why didn't I receive an email notifying me that my job was complete? How do I cite MetaQuery? Q: How can I query the abundance of a specific organism, rather than a specific gene? Q: What are the best alignment parameters to use? This is an ...

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Visualization and Graphics Lab

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Our open-access paper " Unboxing Cluster Heatmaps. Is now published in BMC Bioinformatics, Volume 18 (Supplement 2):63 — Proceedings of the Symposium on Biological Data Visualization at VIS 2016! Posted February 23, 2017 by Sophie Engle. Spring 2017 Lab Meetings. We will hold weekly lab meetings in Spring 2017 every Thursday from 3:00pm to 4:00pm in LS 103. Posted December 13, 2016 by Sophie Engle. We will be offering the following courses during the Spring 2017 semester:. CS 360 Data Visualization.

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Thoughts on public life and conversation in Jacksonville and beyond. Posted: January 25, 2008. Been gone for a while, but I thought I'd post this in the off-chance that anybody would look up the ol' Doctor in the next day or so . The Florida Times-Union has this afternoon announced the resignation of Editor Pat Yack and the retirement of Managing Editor Mike Richey. Please click here for the story. It's a shame. Not that they're leaving, there's not really anything else left to do in that regard. Doc's f...

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Katherine Pollard's Research Group -- Gladstone Institutes, UCSF

Gladstone Institutes, UC San Francisco. We develop and apply. Regions of the primate. About Human Accelerated Regions (HARs) appeared in Science. Liz Pennisi covered the discovery and analysis of HARs by the Pollard lab, as well as recent follow up work by several other groups to show that HARs function as developmental enhancers. Bioinformatics PhD student Stephen Nayfach received the UCSF Fletcher Jones Fellowship. Katie Pollard and Shannon Bennett. Organized by the California Academy of Sciences.

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Pollard Lab – Gladstone Institutes, UC San Francisco

Talks and other media. We are a bioinformatics research lab focused on developing novel methods and using them to study genome evolution, organization, and regulation. Our mission is to decode biomedical knowledge that is missed without rigorous statistical approaches. Katie Pollard and other Women Who Lead in Life Sciences. Speak out on challenges for female scientists. Gladstone launched a new Institute of Data Science and Biotechnology. With Katie Pollard as Director. Check out the press release.

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