The research group of Katherine S. Pollard PhD at the University of California, San Francisco -- Gladstone Institutes & Division of Biostatistics
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Katherine Pollard's Research Group -- Gladstone Institutes, UCSF | docpollard.com Reviews
https://docpollard.com
The research group of Katherine S. Pollard PhD at the University of California, San Francisco -- Gladstone Institutes & Division of Biostatistics
docpollard.com
Katherine Pollard's Research Group -- Gladstone Institutes, UCSF
http://www.docpollard.com/jobs.html
Gladstone Institutes, UC San Francisco. If you are interested in being a graduate student in the lab, you should first enroll in a UCSF graduate program, such as Bioinformatics. Graduate students take a year of classes and do rotation projects in several labs before choosing an advisor. Individuals cannot be admitted directly into a UCSF/Gladstone lab.
Katherine Pollard's Research Group -- Gladstone Institutes, UCSF
http://www.docpollard.com/people.html
Gladstone Institutes, UC San Francisco. Hane Ryu (joint with Nadav Ahituv. Bioinformatics PhD, 6/15. Alisha Holloway, Staff Scientist 2009-2015. Current position: Scientist, Phylos Bioscience. Molong Li, Sarnoff Fellow 2013-2014. Joint with Deepak Srivastava. Current position: Medical student, Johns Hopkins. Bioinformatics PhD, 6/14. Current position: Scientist, Counsyl. Current position: Assistant Professor, Oregon State University. Current position: Bioinformatician, Invitae. UC Davis School of Medicine.
Katherine Pollard's Research Group -- Gladstone Institutes, UCSF
http://www.docpollard.com/software.html
Gladstone Institutes, UC San Francisco. A Metagenomic Pipeline for Automated Simulations and Analysis of Gene Families. Simulating metagenomes from genomes in the short read archive. Phylogenetic clustering of metagenomic sequences into operational taxonomic units (OTUs). Average genome size estimation from shotgun data. Tools for building protein families and annotating metagenomes. Tools for classifying shotgun metagenomic reads into protein families. Enhancer-promoter 3D interaction models. Pollard La...
Katherine Pollard's Research Group -- Gladstone Institutes, UCSF
http://www.docpollard.com/index.html
Gladstone Institutes, UC San Francisco. We develop and apply. Regions of the primate. Alex Pico, Anders Riutta, and collaborators modernized WikiPathways. And linked it to other biological knowledge bases using semantic web and ontology approaches. Read the press release. Our work on Human Accelerated Regions was featured in a Live Science. Article about "Prehistoric X-Men". The White House Office of Science and Technology Policy announces the National Microbiome Initiative. Katie Pollard, Nevan Krogan.
Katherine Pollard's Research Group -- Gladstone Institutes, UCSF
http://www.docpollard.com/publications.html
Gladstone Institutes, UC San Francisco. S Engle, S. Whalen, A. Joshi, K.S. Pollard (2016). Unboxing Cluster Heatmaps. Proceedings of the 6th Symposium on Biological Data Visualization (BioVis) (to appear). R Thomas, S. Thomas, A.K. Holloway, K.S. Pollard (2016). Features that define the best ChIP-seq peak calling algorithms. Briefings in Bioinformatics, Early Access. ( Link to Briefings. MBio 7(3): e00714-16. ( Link to mBio. Nature Genetics, 48: 488-496. ( Link to Nature. SA Myers, S. Peddada, N....L Lun...
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About | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions
https://iseem2.wordpress.com/about
ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. ISEEM2 is a collaboration between the labs of Katherine Pollard. At UCSF, Jonathan Eisen. At UC Davis and Thomas Sharpton and Oregon State. ISEEM1 was a collaboration between the labs of Jonathan Eisen, Katherine Pollard and Jessica Green. Leave a Reply Cancel reply. Enter your comment here.
iSEEM Project: February 2008
http://iseem.blogspot.com/2008_02_01_archive.html
This is a blog for new collaborative project on integrating statistical, ecological, and evolutionary methods for metagenomics ( iSEEM). Tuesday, February 19, 2008. Postdoctoral Positions in Metagenomic Informatics. More information available at: http:/ iseem.org. We are looking for people with a demonstrated interest in working at the interface between the quantitative and biological sciences. We will offer a generous salary and benefits commensurate with experience. 2) CV (including publications),.
iSEEM1 | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions
https://iseem2.wordpress.com/iseem1
ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. We use the term metagenomics to refer to shotgun sequencing DNA from environmental samples. The NAS report identifies five challenges in metagenomics: need for interdisciplinary teams, role of government, methods development, complexities of data analysis and need for databases. Metagenomic anal...
Janelia Farm | Cryptogenomicon
https://cryptogenomicon.org/category/janelia-farm
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Category Archives: Janelia Farm. September 11, 2014. Belated congratulations to Rob Finn, who has moved to EMBL-EBI to lead the Protein Families team. The HMMER web services pilot project. That HHMI has funded at Janelia, under Rob’s leadership, is now in transition to EBI, and Rob and I will write more about this in the future. This fall. The nhmmer software project and his lead role in the Dfam mobile element database.
People | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions
https://iseem2.wordpress.com/people
ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. Lab of Katherine Pollard. Lab of Jonathan Eisen. Post doc: Sarah Hird. Bioinformatics Engineer: Guillaume Jospin. PhD Student: Ladan Doroud. Project Scientist: Dongying Wu. Lab of Jonathan Eisen. Post doc: Morgan Langille. Now Asst. Prof. at Dalhausie University). PhD Student: Srijak Bhatnagar.
Carry The One Radio
http://www.carrytheoneradio.com/index.html
Carry the One Radio. August 08, 2016. How to Build a Human: Part 2. In Part 2 of “How to Build a Human”, we continue our investigation of our unique features that set us apart from other animals. We spoke to Dr. Nathan Young from the University of California San Francisco, who studies the development of the human skeleton and looks at how the variations in our skeletal structure have contributed to our evolution and the development of human civilization. Monkeys Spinning Monkeys—Kevin MacLeod. Of the Uni...
iSEEM Project: Welcome
http://iseem.blogspot.com/2008/02/welcome.html
This is a blog for new collaborative project on integrating statistical, ecological, and evolutionary methods for metagenomics ( iSEEM). Friday, February 1, 2008. Welcome to the Blog for the iSEEM Project, a collaboration between the labs of Katherine Pollard. See the UO microbial ecology journal club discussion on the GOS viral metagenomics project this week at PLoS One. Http:/ www.plosone.org/home.action. February 19, 2008 at 10:51 PM. This comment has been removed by the author.
iSEEM Project: iSEEM Job Ad
http://iseem.blogspot.com/2008/02/iseem-job-ad.html
This is a blog for new collaborative project on integrating statistical, ecological, and evolutionary methods for metagenomics ( iSEEM). Tuesday, February 19, 2008. Postdoctoral Positions in Metagenomic Informatics. More information available at: http:/ iseem.org. We are looking for people with a demonstrated interest in working at the interface between the quantitative and biological sciences. We will offer a generous salary and benefits commensurate with experience. 2) CV (including publications),.
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Thoughts on public life and conversation in Jacksonville and beyond. Posted: January 25, 2008. Been gone for a while, but I thought I'd post this in the off-chance that anybody would look up the ol' Doctor in the next day or so . The Florida Times-Union has this afternoon announced the resignation of Editor Pat Yack and the retirement of Managing Editor Mike Richey. Please click here for the story. It's a shame. Not that they're leaving, there's not really anything else left to do in that regard. Doc's f...
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Katherine Pollard's Research Group -- Gladstone Institutes, UCSF
Gladstone Institutes, UC San Francisco. We develop and apply. Regions of the primate. About Human Accelerated Regions (HARs) appeared in Science. Liz Pennisi covered the discovery and analysis of HARs by the Pollard lab, as well as recent follow up work by several other groups to show that HARs function as developmental enhancers. Bioinformatics PhD student Stephen Nayfach received the UCSF Fletcher Jones Fellowship. Katie Pollard and Shannon Bennett. Organized by the California Academy of Sciences.
Pollard Lab – Gladstone Institutes, UC San Francisco
Talks and other media. We are a bioinformatics research lab focused on developing novel methods and using them to study genome evolution, organization, and regulation. Our mission is to decode biomedical knowledge that is missed without rigorous statistical approaches. Katie Pollard and other Women Who Lead in Life Sciences. Speak out on challenges for female scientists. Gladstone launched a new Institute of Data Science and Biotechnology. With Katie Pollard as Director. Check out the press release.
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