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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri | eb-register.info Reviews

https://eb-register.info

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

INTERNAL PAGES

eb-register.info

1

DeNovoVariationPipeline – bbmri

http://www.eb-register.info/wiki/DeNovoVariationPipeline

This pipeline aims to discover and verify the 'de-novo' mutations. Yurii, Kai, Morris. Availability of FASTQ (hard) and VCF (soft) data, ChipBasedQcPipeline. Other projects depending on this. No, this is an end-project. Establish custom 'de-novo' discovery pipeline. Identify and verify a number of 'de-novo' mutations. Because GvNL will do sequencing at 12x, identification of 'de-novo' variants based on simplistic Mendelian checks (see MendelianQcPipeline. Last modified on Sep 26, 2010 9:54:37 PM.

2

Timeline – bbmri

http://www.eb-register.info/timeline

Larr; Previous Period. Next Period →. For information about the timeline view. Download in other formats:. Powered by Trac 1.0.7. Visit the Trac open source project at. Http:/ trac.edgewall.org/.

3

DataConcordance – bbmri

http://www.eb-register.info/wiki/DataConcordance

Concordance aggregation using home-made scripts. Reporting using R scripts. Results - GoNL Pilot. This page summarizes the methods and results of the concordance checks between the following data sets:. All data sets were either generated or converted to VCF files aligned on the build Hg19 of the Human Reference Genome:. See GoNL Immunochip Data Preparation. About how the Immunochip data was processed. About how to liftover a VCF file from one reference to another. Was used. More specifically:. The outpu...

4

CoverageAnalysisPipeline – bbmri

http://www.eb-register.info/wiki/CoverageAnalysisPipeline

Antoine van Kampen, Barbera van Schaik, Silvia D Olabarriaga, Mark Santcroos, AMC. Calculates coverage per base. Creates a text file which you can use to make a histogram (coverage versus frequency). SortedBamFile, a sorted bam file. ChromSizesTxt, e.g. the chromInfo.txt from the UCSC database. CoverageHistogram: summary of coveragePerBase. An overview about the genome coverage of the sequence experiment. Load this into excel/calc/gnuplot/some-other-program to make a graph. WF Create BWA index on database.

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bbmri

http://www.eb-register.info/wiki/WikiStart

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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