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ECRbase :: Database of Evolutionary Conserved Regions, Promoters, and Transcription Factor Binding Sites in Vertebrate Genomes

We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements. Is the Database of Evolutionary Conserved Regions (ECRs), Promoters,. And Transcription Factor Binding Sites in Vertebrate Genomes. Created using ECR Browser. Of RefSeq and UCSC known genes. Transcription Factor Binding Sites.

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ECRbase :: Database of Evolutionary Conserved Regions, Promoters, and Transcription Factor Binding Sites in Vertebrate Genomes | ecrbase.dcode.org Reviews
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We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements. Is the Database of Evolutionary Conserved Regions (ECRs), Promoters,. And Transcription Factor Binding Sites in Vertebrate Genomes. Created using ECR Browser. Of RefSeq and UCSC known genes. Transcription Factor Binding Sites.
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ECRbase :: Database of Evolutionary Conserved Regions, Promoters, and Transcription Factor Binding Sites in Vertebrate Genomes | ecrbase.dcode.org Reviews

https://ecrbase.dcode.org

We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements. Is the Database of Evolutionary Conserved Regions (ECRs), Promoters,. And Transcription Factor Binding Sites in Vertebrate Genomes. Created using ECR Browser. Of RefSeq and UCSC known genes. Transcription Factor Binding Sites.

LINKS TO THIS WEBSITE

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/cite.php

Return to submitted job. If you find the results useful for your research, please cite DiRE as. Gotea, V. and I. Ovcharenko ( 2008. DiRE: identifying distant regulatory elements of co-expressed genes. Nucleic Acids Research. Doi:10.1093/nar/gkn300 [ Abstract. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/index.php?id=example

The requested ID is not valid. Please let us know ( dcode@ncbi.nlm.nih.gov.

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/return.php

Return to submitted job. Please enter a 16-digit request ID. To return to your previously submitted job:. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/details.php

Return to submitted job. Regulation of gene expression in eukaryotic genomes is established through a complex cooperative activity of proximal promoters and distant regulatory elements (REs) such as enhancers, repressors, and silencers. We developed a web server called DiRE. Lements, based on the Enhancer Identification (EI) method. Allows users to start their analysis with raw microarray expression data. Continue to: screen shots.

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/screenshots.php

Return to submitted job. You'll see this screen while DiRE is running. Note the job ID at the top, you can use it later to return to your query. It can take up to 30 minutes for a job to complete, depending on the number of signal and background genes supplied. After a successful completion of your query, DiRE will display a results page, divided into four sections as follows:. If you didn't copy this 16-digit number from the running screen, do it now! In a nutshell, here is what you were looking for!

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We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements. Is the Database of Evolutionary Conserved Regions (ECRs), Promoters,. And Transcription Factor Binding Sites in Vertebrate Genomes. Created using ECR Browser. Of RefSeq and UCSC known genes. Transcription Factor Binding Sites.

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