lifebiotechnology.org
Life Biotechnology - Proteomics
http://www.lifebiotechnology.org/proteomics.html
Human Proteome, Proteomics, and Protein Bioinformatics resources. Under Development. Search the complete human proteome ( 21,000 proteins) by protein name or accession. The database will also return the gene, chromosome location, and a brief description. Curated from Uniprot. 2-D PAGE and SDS-PAGE. Protein data, gels, and resources. Open source Open2Dprot Project for n-Dimensional Protein Expression Data Analysis. 2D and SDS-PAGE Guides and Protocols. Mini-Protean 3 Cell Manual. Analysis of a protein's 3...
dsdht.wikispaces.com
Data Science | DSDHT - Predicting drug-target interactions with 3D visualization and molecular docking
http://dsdht.wikispaces.com/Predicting+drug-target+interactions+with+3D+visualization+and+molecular+docking
Skip to main content. Get your Wikispaces Classroom now:. The easiest way to manage your class. Are there any new drugs left? Boiling the ocean - integrating everything for patient care. Boiling the ocean - integrating everything together. Gene expression data analysis. Introduction to R Shiny. Managing disease with data science. Mapping Structure to function. Predicting drug-target interactions with 3D visualization and molecular docking. Need For 3D Visualization of Proteins. Ligand comes from ligare m...
source.rcsb.org
jCE/jFatCat Help - Explanation of frequently used terms.
http://source.rcsb.org/jfatcatserver/help.jsp
Explanation of frequently used terms. CE is a method for calculating pairwise structure alignments. JCE is a re-implementation of the original CE source code in the Java programming language. While the algorithm is principle exactly the same as in the original implementation, jCE provides several improvements over the original code:. New internal data model:. The internal representation of jCE is now based on the BioJava protein structure module. It supports both PDB file and mmCif files as input. The or...
pspace.info
ProteinSpace SSM - Contact Us
http://pspace.info/page/about
Protein Structure Space Explorer. Biocomputing and Media Research Group. PSpace allows for exploration of structural relationships between proteins utilizing structure space mapping. Mapping is achieved by performing all-against-all alignments on representative protein structures, then embedding the pairwise structural similarities into a low dimensional space suitable for visualization and algorithmic analysis. This transformation from high to low dimensionality is performed through multi-dimens...Creat...
cl.sdsc.edu
jCE/jFatCat Help - Explanation of frequently used terms.
http://cl.sdsc.edu/jfatcatserver/help.jsp
Explanation of frequently used terms. CE is a method for calculating pairwise structure alignments. JCE is a re-implementation of the original CE source code in the Java programming language. While the algorithm is principle exactly the same as in the original implementation, jCE provides several improvements over the original code:. New internal data model:. The internal representation of jCE is now based on the BioJava protein structure module. It supports both PDB file and mmCif files as input. The or...
bfgur.blogspot.com
BFG@University of Richmond: ab initio protein structure prediction
http://bfgur.blogspot.com/2005/11/ab-initio-protein-structure-prediction.html
Friday, November 04, 2005. Ab initio protein structure prediction. The "holy grail" of structural genomics is ab initio protein structure prediction; i.e., the ability to reliably predict tertiary structure from primary sequence. There are structure comparison "engines" and databases such as FATCAT. Page However, there are not too many ab initio sites for predicting tertiary. Structure viewer. Here's a link. To my results for the first TPR repeat of Drosophila. Posted by Joe Gindhart @ 6:18 AM.
bfgur.blogspot.com
BFG@University of Richmond: November 2005
http://bfgur.blogspot.com/2005_11_01_archive.html
Monday, November 28, 2005. Partnership for Biodiversity Informatics. Paper about Electronic Field Guides. Tropical Plant Database@Missouri Botanical Garden. Digital Atlas of Virginia Flora. Article about Remote Sensing Technology. Long Term Ecological Research (LTER) Network. Trees and Shrubs of the University of Richmond Campus. Posted by Joe Gindhart @ 11:08 AM. Thursday, November 17, 2005. Ecoinformatics and Complex Systems Analysis. Posted by Joe Gindhart @ 10:06 AM. Monday, November 14, 2005. The au...
