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Available lists of results. Align 2 sequences, dot plot. All databases were updated in December 2014. PDB database. Is updated every Wednesday; Pfam database. 1) Please paste one. Amino-acid sequence in fasta format (please sign in to submit more sequences and to store a list of your results). 2) Sequences longer than 1000 aa should be split into (putative) domains. 3) Examples of ffas server input. 10 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100. 4) Option: upload psi-blast result in text format. Ying Zh...

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FFAS03 search | ffas.godziklab.org Reviews

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Available lists of results. Align 2 sequences, dot plot. All databases were updated in December 2014. PDB database. Is updated every Wednesday; Pfam database. 1) Please paste one. Amino-acid sequence in fasta format (please sign in to submit more sequences and to store a list of your results). 2) Sequences longer than 1000 aa should be split into (putative) domains. 3) Examples of ffas server input. 10 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100. 4) Option: upload psi-blast result in text format. Ying Zh...

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FFAS03 search | ffas.godziklab.org Reviews

https://ffas.godziklab.org

Available lists of results. Align 2 sequences, dot plot. All databases were updated in December 2014. PDB database. Is updated every Wednesday; Pfam database. 1) Please paste one. Amino-acid sequence in fasta format (please sign in to submit more sequences and to store a list of your results). 2) Sequences longer than 1000 aa should be split into (putative) domains. 3) Examples of ffas server input. 10 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100. 4) Option: upload psi-blast result in text format. Ying Zh...

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ffas.godziklab.org

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FFAS03 documentation

http://ffas.godziklab.org/ffas-cgi/cgi/document.pl?ses=&rv=&lv=

Available lists of results. Align 2 sequences, dot plot. The databases are updated with the latest structural and sequence information (see Updates. Rychlewski, L., Jaroszewski, L., Li, W. and Godzik, A. (2000). Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Science. Jaroszewski, L., Rychlewski, L. and Godzik, A. (2000). Improving the quality of twilight-zone alignments. Protein Science. 2013) doi: 10.1093. PubMed. Step 3: Calculation of an alig...

2

FFAS03 documentation

http://ffas.godziklab.org/ffas-cgi/cgi/document.pl

Available lists of results. Align 2 sequences, dot plot. The databases are updated with the latest structural and sequence information (see Updates. Rychlewski, L., Jaroszewski, L., Li, W. and Godzik, A. (2000). Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Science. Jaroszewski, L., Rychlewski, L. and Godzik, A. (2000). Improving the quality of twilight-zone alignments. Protein Science. 2013) doi: 10.1093. PubMed. Step 3: Calculation of an alig...

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bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/servers.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Bioinformatics Web Servers and Databases. Is a new, updated and maintained version of the F. Server is a pairwise flexible protein structure alignment server. See Bioinformatics, 2003, 19(Suppl 2):II246-II255. And Nucleic Acids Res. 2014 May 16. pii: gku394. Is a database that explores the intrinsic flexibil...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/publication.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Porta-Pardo E, Godzik A. Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. PubMed. Thomas Hrabe, Lukasz Jaroszewski and Adam Godzik. Revealing aperiodic aspects of solenoid proteins from sequence information. Bioinformatics. 2016 Jun 9. PubMed. AIDA: ab initio domain ass...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

ffas.burnham.org

AIDA

http://ffas.burnham.org/AIDA

A large portion of proteins are multi-domain proteins, where individual domain structures often interact with each other. Using knowledge-based ab initio potential, AIDA attempts to find the best domain arrangements while maintaining chain connectivity. The structures themselves are kept rigid during the energy minimization simulation, treating only the link regions as completely flexible. 1) Please paste the full amino-acid sequence in fasta format. And run renumber program to handle it. Check this box ...

godziklab.org

Godzik Lab Website

http://www.godziklab.org/pages/servers.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Bioinformatics Web Servers and Databases. Is a new, updated and maintained version of the F. Server is a pairwise flexible protein structure alignment server. See Bioinformatics, 2003, 19(Suppl 2):II246-II255. And Nucleic Acids Res. 2014 May 16. pii: gku394. Is a database that explores the intrinsic flexibil...

godziklab.org

Godzik Lab Website

http://www.godziklab.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

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FFAS03 search

We are hiring bioinformatics experts and software developers. Join us! Available lists of results. Align 2 sequences, dot plot. All databases were updated in May 2016. PDB database. Is updated every Wednesday; Pfam database. 1) Please paste one. Amino-acid sequence in fasta format (please sign in to submit more sequences and to store a list of your results). 2) Sequences longer than 1000 aa should be split into (putative) domains. 3) Examples of ffas server input. Can only be used for a single. Selected ...

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ffas.godziklab.org

FFAS03 search

Available lists of results. Align 2 sequences, dot plot. All databases were updated in December 2014. PDB database. Is updated every Wednesday; Pfam database. 1) Please paste one. Amino-acid sequence in fasta format (please sign in to submit more sequences and to store a list of your results). 2) Sequences longer than 1000 aa should be split into (putative) domains. 3) Examples of ffas server input. 10 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100. 4) Option: upload psi-blast result in text format. Ying Zh...

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ffas.sanfordburnham.org

FFAS03 search

Available lists of results. Align 2 sequences, dot plot. All databases were updated in December 2014. PDB database. Is updated every Wednesday; Pfam database. 1) Please paste one. Amino-acid sequence in fasta format (please sign in to submit more sequences and to store a list of your results). 2) Sequences longer than 1000 aa should be split into (putative) domains. 3) Examples of ffas server input. 10 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100. 4) Option: upload psi-blast result in text format. Ying Zh...

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