proteins.burnham.org
2q9k - TOPSAN
http://proteins.burnham.org/Proteins/JCSG/2q9k
The Open Protein Structure Annotation Network. Page last modified 22:33, 8 May 2012. Crystal structure of conserved uncharacterized protein (ZP 00539648.1) from Exiguobacterium sp. 255-15 at 1.59 A resolution. To be published. TPS1641,YP 001814466.1, 92207. Google Scholar output for 2q9k. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard. TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org. Ligands in PSI structures.
protmod.godziklab.org
Protein Modeling: External Servers
http://protmod.godziklab.org/protmod-cgi/displayServers.pl
Homology Methods - FFAS. A new, updated and maintained version of the Fold and Function Assignment System (FFAS). The FFAS fold assignment method is based on the profile-profile matching algorithm. The crucial part of the algorithm is the novel, two dimensional weighting scheme which takes into account the topology of the evolutionary tree of all the proteins in the homologous family. Homology Methods - suboptFFAS. Modeling Methods - Modeller. Modeling Methods - SCWRL.
protmod.godziklab.org
Godzik Lab -- Protein Structure Modeling
http://protmod.godziklab.org/protmod/doc.html
Protein Structure Modeling - Documentation. Introduction (What and How). ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores. In ProtMod the protein modeling pipeline is implemented as a tree. The calculation of a single protein model consists of four steps:. And Query By Alignment.
