genetrap.cshl.org

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Cold Spring Harbor Laboratory. Enter ET or GT line:. Welcome to the Arabidopsis Genetrap Website at Cold Spring Harbor Lab. This website describes a collection of transposon insertions and their flanking sequences from the Martienssen lab. A major goal of the NSF Arabidopsis 2010 project is to characterize the roles and functions of unknown and hypothetical genes. The TRAPPER collection currently contains putative insertions in over 1500 of these undescribed genes. Here. Is a listing of these genes.

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Trapper Home Page | genetrap.cshl.org Reviews

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Cold Spring Harbor Laboratory. Enter ET or GT line:. Welcome to the Arabidopsis Genetrap Website at Cold Spring Harbor Lab. This website describes a collection of transposon insertions and their flanking sequences from the Martienssen lab. A major goal of the NSF Arabidopsis 2010 project is to characterize the roles and functions of unknown and hypothetical genes. The TRAPPER collection currently contains putative insertions in over 1500 of these undescribed genes. Here. Is a listing of these genes.

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1 trapper db

2 browser

3 annotations

4 phenotypes

5 blast

6 expression

7 multiple

8 gene trap construct

9 for the project

10 of insertions

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Trapper Home Page | genetrap.cshl.org Reviews

https://genetrap.cshl.org

Cold Spring Harbor Laboratory. Enter ET or GT line:. Welcome to the Arabidopsis Genetrap Website at Cold Spring Harbor Lab. This website describes a collection of transposon insertions and their flanking sequences from the Martienssen lab. A major goal of the NSF Arabidopsis 2010 project is to characterize the roles and functions of unknown and hypothetical genes. The TRAPPER collection currently contains putative insertions in over 1500 of these undescribed genes. Here. Is a listing of these genes.

INTERNAL PAGES

genetrap.cshl.org

1

Trapper Annotation Scheme

http://genetrap.cshl.org/TrAnnotationScheme.html

Cold Spring Harbor Laboratory. Enter ET or GT line:. Sequences flanking Ds insertions are retrieved from the database and compared with sequence databases by BLASTN controlled by automated processes written in Java. The BLAST search is conducted with an Expect threshold of 0.0001. Two databases are used as references:. The GenBank nonredundant (nr) set of nucleotide sequences at NCBI. The TIGR chromosome assemblies at The Institute for Genome Research. Choice of Matches to Put in the Database. If the sta...

2

Trapper Multiple Criteria

http://genetrap.cshl.org/TrMultiple.html

Cold Spring Harbor Laboratory. Enter ET or GT line:. Expression patterns, annotations, and phenotypes can be screened simultaneously by selecting the desired location of expression and then entering keywords or phrases in the Annotation, and Phenotype textboxes. (To make more complex queries of annotations and expression, please use the "Annotations" and "Expression" pages.) At least 2 of the input types must be filled.

3

Enhancer and Gene Trap Transposon Mutagenesis in Arabidopsis

http://genetrap.cshl.org/traps.html

Enhancer and Gene Trap Transposon Mutagenesis in Arabidopsis. Adapted from "Enhancer and Gene trap transposon mutagenesis in Arabidopsis", R. Martienssen and P. Springer, 1998 in "Insertional Mutagenesis: a practical approach" Oxford University Press (G. Coupland, ed.)]. In this summary, we will describe the enhancer trap and gene trap transposon system that we and our colleagues have developed in Arabidopsis. Enhancer and gene trap transposons. Transposable elements (Figure 1). The Ds. Glucuronidase (GU...

4

Trapper Current Progress

http://genetrap.cshl.org/servlet/TrCurrentStats

Cold Spring Harbor Laboratory. Enter ET or GT line:. The database is not available for searching at this time.

5

Trapper BLAST

http://genetrap.cshl.org/TrBLAST.html

Cold Spring Harbor Laboratory. Enter ET or GT line:. Enter DNA sequence in FASTA format below. Sequences sent as queries are mapped to positions on the chromosome assemblies made by TIGR, then insertions mapping within and near them are returned. By raising the Expect threshold, less exact matches can be screened. BLASTN: Nucleotide query compared to nucleotide database. TBLASTN: Protein query compared to dynamically translated nucleotide database.

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trim.sinica.edu.tw

Useful Links | TRIM

http://trim.sinica.edu.tw/links

Other rice insertional mutants database. The Rice Functional Genomics Program (RIFGP), China. RiceGE : Rice Functional Genomic Mapping Tool. POSTECH RISD : Rice T-DNA Insertion Seqence Database. CSIRO : Rice Functional Genomics Project. Sundaresan Rice Genomics Page. T-DAN Taged Rice Service Center (TTRSC). Rice traditional mutant database. Arabidopsis insertional mutant database. Arabidopsis thaliana Insertional database. Arabidopsis Transposon Insertion Service (ATIS). Arabidopsis TILLING Project (ATP).

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genetrap.cshl.edu

Trapper Home Page

Cold Spring Harbor Laboratory. Enter ET or GT line:. Welcome to the Arabidopsis Genetrap Website at Cold Spring Harbor Lab. This website describes a collection of transposon insertions and their flanking sequences from the Martienssen lab. A major goal of the NSF Arabidopsis 2010 project is to characterize the roles and functions of unknown and hypothetical genes. The TRAPPER collection currently contains putative insertions in over 1500 of these undescribed genes. Here. Is a listing of these genes.

genetrap.cshl.org

Trapper Home Page

Cold Spring Harbor Laboratory. Enter ET or GT line:. Welcome to the Arabidopsis Genetrap Website at Cold Spring Harbor Lab. This website describes a collection of transposon insertions and their flanking sequences from the Martienssen lab. A major goal of the NSF Arabidopsis 2010 project is to characterize the roles and functions of unknown and hypothetical genes. The TRAPPER collection currently contains putative insertions in over 1500 of these undescribed genes. Here. Is a listing of these genes.

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2910 new clones released. Clones are generated with enhanced gene trap vectors. 8247 new gene trap sequence tags released. Release of the new GGTC web interface. New release of GGTC gene trap library:. More than 35000 gene trap sequence tags analyzed by genomic PCR. The German Genetrap Consortium (GGTC). Generates a reference library of gene trap sequence tags (GTST) from insertional mutations generated in mouse embryonic stem (ES) cells. Funded by the Federal Ministry of Education and Research ( BMBF.

genetrap.helmholtz-muenchen.de

GGTC German Gene Trap Consortium

2910 new clones released. Clones are generated with enhanced gene trap vectors. 8247 new gene trap sequence tags released. Release of the new GGTC web interface. New release of GGTC gene trap library:. More than 35000 gene trap sequence tags analyzed by genomic PCR. The German Genetrap Consortium (GGTC). Generates a reference library of gene trap sequence tags (GTST) from insertional mutations generated in mouse embryonic stem (ES) cells. Funded by the Federal Ministry of Education and Research ( BMBF.

genetrap.org

IGTC, International Gene Trap Consortium

Gene trapping is a high-throughput approach that is used to introduce insertional mutations across the genome in mouse embryonic stem (ES) cells. In addition to generating standard loss-of-function alleles, newer gene trap vectors offer a variety of post-insertional modification strategies for the generation of other experimental alleles. IGTC cell lines in database:. All news and events.

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.: TIGEM - IRBM GeneTRAP Project :.

Several collections of mutated mouse embryonic stem cell lines are available. The objective of the joint IRBM-TIGEM TRAP-FLIP project is to demonstrate the feasibility of constructing a library of ES cell clones in which each expressed gene is tagged with cassette exchange sites. Our system is based on a novel types of gene trap vectors containing two heterospecific FRT sites, and on exchange vectors designed to exchange the trapped cassette with any gene of interest. Search by Clone ID(s).