genome.semo.edu genome.semo.edu

genome.semo.edu

Biological Research

Southeast Fungal Biology Group. Walt W. Lilly. Allen C. Gathman. Search Walt's Reprint Files. Genome (13 chromosomes) - protected tracks. Publications from our Lab. Distinguished alumni from our Lab.

http://genome.semo.edu/

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Biological Research | genome.semo.edu Reviews
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Southeast Fungal Biology Group. Walt W. Lilly. Allen C. Gathman. Search Walt's Reprint Files. Genome (13 chromosomes) - protected tracks. Publications from our Lab. Distinguished alumni from our Lab.
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1 email walt
2 email allen
3 applications
4 coprinus cinereus
5 genome project
6 gbrowse coprinus
7 genome broad assembly
8 gbrowse phanerochaete
9 genome
10 blast basidiomycetes locally
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email walt,email allen,applications,coprinus cinereus,genome project,gbrowse coprinus,genome broad assembly,gbrowse phanerochaete,genome,blast basidiomycetes locally,protocols,msds,dna tools,other resources,blast,ncbi,basidiomycetes,duke,lab/footer htm
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Biological Research | genome.semo.edu Reviews

https://genome.semo.edu

Southeast Fungal Biology Group. Walt W. Lilly. Allen C. Gathman. Search Walt's Reprint Files. Genome (13 chromosomes) - protected tracks. Publications from our Lab. Distinguished alumni from our Lab.

INTERNAL PAGES

genome.semo.edu genome.semo.edu
1

Coprinus cinereus genome annotations (Broad contigs)

http://genome.semo.edu/cgi-bin/gbrowse/cc

Coprinus cinereus genome annotations (Broad contigs). Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Download Decorated FASTA File. Coprinus cinereus chromosomes (with unplaced contigs). Coprinus cinereus chromosomes 9/09. Coprinus cinereus genome annotations (Broad contigs). Phanerochaete chrysosporium genome (DOE/JGI, 9/2003). Information a...

2

Coprinopsis cinerea genome

http://genome.semo.edu/ccin

Stajich et al. 2010. Maintained by Allen Gathman. Southeast Missouri State University. Photos: Jason Stajich, Julio Eiroa, Walt Lilly.

3

Blast Basidiomycetes

http://genome.semo.edu/cgi-bin/blastall.pl

Use this page to perform Blast searches against the databases below. Be sure to match your input type and database type to the program, or your results may be peculiar. Blastp (protein input, protein database). Blastn (nucleotide input, nucleotide database). Blastx (nucleotide query, protein database). Protein - SNAP predicted genes, translated). Protein - GLEAN gz predicted genes, translated). Protein - contigs translated in all reading frames). Protein - Jan06m300 predicted genes, translated).

4

DNA Tools

http://genome.semo.edu/cgi-bin/dnatools.pl

Enter the sequence in FASTA. Format. Unknown nucleotides may be represented as N - characters other than a,t,c,g, and n in the sequence will be disregarded. The program is case-insensitive. Choose the function desired. Format DNA Sequence (no numbers). Format Protein Sequence (no numbers). Get GC content and Base Count. Get Tm of oligos. This page generated by DNATools.

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